rs2129785
From SNPedia
| Orientation | minus |
| Stabilized | minus |
| Make rs2129785(A;A) |
| Make rs2129785(A;G) |
| Make rs2129785(G;G) |
| Reference | GRCh38 38.1/142 |
| Chromosome | 17 |
| Position | 30263512 |
| Gene | BLMH |
| is a | snp |
| is | mentioned by |
| dbSNP | rs2129785 |
| dbSNP (classic) | rs2129785 |
| ClinGen | rs2129785 |
| ebi | rs2129785 |
| HLI | rs2129785 |
| Exac | rs2129785 |
| Gnomad | rs2129785 |
| Varsome | rs2129785 |
| LitVar | rs2129785 |
| Map | rs2129785 |
| PheGenI | rs2129785 |
| Biobank | rs2129785 |
| 1000 genomes | rs2129785 |
| hgdp | rs2129785 |
| ensembl | rs2129785 |
| geneview | rs2129785 |
| scholar | rs2129785 |
| rs2129785 | |
| pharmgkb | rs2129785 |
| gwascentral | rs2129785 |
| openSNP | rs2129785 |
| 23andMe | rs2129785 |
| SNPshot | rs2129785 |
| SNPdbe | rs2129785 |
| MSV3d | rs2129785 |
| GWAS Ctlg | rs2129785 |
| Max Magnitude | 0 |
| ? | (A;A) (A;G) (G;G) | 28 |
|---|---|---|
|
| ||
Based on [PMID 21670732
] with 2823 samples a haplotype of A+A in rs2129785+rs11867581 predicts short allele of 5-HTTLPR with good accuracy. Haplotype G+G has not been generally observed, so phase can always be determined. The only possible haplotypes are thus A+A short 91% of the time, A+G long 96% of the time and G+A always long. [PMID 22504458] uses regression model over eight SNP's available on Illumina microarray with higher expected accuracy.
