Difference between revisions of "Rs16964465"

Latest revision as of 14:10, 6 January 2018

plus

Geno	Mag	Summary
(A;A)	0	common in complete genomics

Make rs16964465(A;C)

Make rs16964465(C;C)

Reference

GRCh38 38.1/141

Chromosome

15

Position

51680150

Gene

SCG3

is a	snp
is	mentioned by
dbSNP	rs16964465
dbSNP (classic)	rs16964465
ClinGen	rs16964465
ebi	rs16964465
HLI	rs16964465
Exac	rs16964465
Gnomad	rs16964465
Varsome	rs16964465
LitVar	rs16964465
Map	rs16964465
PheGenI	rs16964465
Biobank	rs16964465
1000 genomes	rs16964465
hgdp	rs16964465
ensembl	rs16964465
geneview	rs16964465
scholar	rs16964465
google	rs16964465
pharmgkb	rs16964465
gwascentral	rs16964465
openSNP	rs16964465
23andMe	rs16964465
SNPshot	rs16964465
SNPdbe	rs16964465
MSV3d	rs16964465
GWAS Ctlg	rs16964465

GMAF

0.07117

Max Magnitude

0

?

(A;A) (A;C) (C;C)

28

rs16964465 rs16964476 may influence the risk of obesity through possible regulation of hypothalamic neuropeptide secretion [PMID 17200173]

OMIM	611796
Desc	SECRETOGRANIN III; SCG3
Variant
Related	also

@@ Line 1: / Line 1: @@
-{{rsnum
+{{Rsnum
-| rsid =16964465
+|rsid=16964465
-| Gene = SCG3
+|Gene=SCG3
-| Chromosome = 15
+|Chromosome=15
-| position = 49759639
+|position=51680150
-| geno1 = (A;A)
+|Orientation=plus
-| geno2 = (A;C)
+|GMAF=0.07117
-| geno3 = (C;C)
+|Assembly=GRCh38
-}}
+|GenomeBuild=38.1
+|dbSNPBuild=141
-[[rs16964465]] [[rs16964476]] may influence the risk of [[obesity]] through possible regulation of hypothalamic neuropeptide secretion [PMID 17094264]
+|geno1=(A;A)
-{{ neighbor
+|geno2=(A;C)
-| rsid = 16964476
+|geno3=(C;C)
-| distance = 1877
+|Gene_s=SCG3
-}}
+|StabilizedOrientation=plus
-{{ neighbor
+}}{{ population diversity
-| rsid = 3764220
+| geno1=(A;A)
-| distance = 289
+| geno2=(A;C)
-}}
+| geno3=(C;C)
-{{ population diversity
-| geno1 = (A;A)
-| geno2 = (A;C)
-| geno3 = (C;C)
 | CEU | 100.0 | 0.0 | 0.0
 | HCB | 86.7 | 13.3 | 0.0
 | JPT | 72.7 | 27.3 | 0.0
-| YRI | 63.6 | 27.3 | 9.1
+| YRI | 63.8 | 27.6 | 8.6
+| ASW | 0.0 | 0.0 | 0.0
+| CHB | 86.7 | 13.3 | 0.0
+| CHD | 0.0 | 0.0 | 0.0
+| GIH | 0.0 | 0.0 | 0.0
+| LWK | 0.0 | 0.0 | 0.0
+| MEX | 0.0 | 0.0 | 0.0
+| MKK | 0.0 | 0.0 | 0.0
+| TSI | 0.0 | 0.0 | 0.0
+| HapMapRevision=28
+}}[[rs16964465]] [[rs16964476]] may influence the risk of [[obesity]] through possible regulation of hypothalamic neuropeptide secretion {{PMID|17200173}}
+{{omim
+|desc=SECRETOGRANIN III; SCG3
+|id=611796
+|rsnum=16964465
 }}
-{{ on chip | 23andMe v1 }}
+{{on chip | 23andMe v1}}
+{{on chip | 23andMe v2}}
+{{on chip | 23andMe v3}}
+{{on chip | 23andMe v4}}
+{{on chip | HumanOmni1Quad}}