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Difference between revisions of "Rs58918655"

From SNPedia
m (updated ClinVar data)
m (updated ClinVar data)
Line 30: Line 30:
 
|SSR=0
 
|SSR=0
 
|SAO=1
 
|SAO=1
|VP=0x050160000a05000002110100
+
|VP=0x050160080a05000002110100
|GENEINFO=KRT12:3859
+
|GENEINFO=KRT12:3859; LOC105371777:105371777
|GENE_NAME=KRT12
+
|GENE_NAME=KRT12; LOC105371777
|GENE_ID=3859
+
|GENE_ID=3859; 105371777
 
|WGT=1
 
|WGT=1
 
|VC=SNV
 
|VC=SNV
 
|CLNALLE=1
 
|CLNALLE=1
 
|CLNHGVS=NC_000017.11:g.40866768A>C
 
|CLNHGVS=NC_000017.11:g.40866768A>C
|CLNSRC=ClinVar; Epithelial Biology; OMIM Allelic Variant
+
|CLNSRC=OMIM Allelic Variant
 
|CLNORIGIN=1
 
|CLNORIGIN=1
|CLNSRCID=NM_000223.3:c.419T>G; KRT12:c.419T>G; 601687.0006
+
|CLNSRCID=601687.0006
 
|CLNSIG=5
 
|CLNSIG=5
 
|CLNCUI=C0339277
 
|CLNCUI=C0339277
Line 46: Line 46:
 
|Disease=Meesman's corneal dystrophy; not provided
 
|Disease=Meesman's corneal dystrophy; not provided
 
|CLNACC=RCV000008388.3; RCV000056425.1
 
|CLNACC=RCV000008388.3; RCV000056425.1
|Tags=RV;PM;SLO;NSM;REF;ASP;LSD;OM
+
|Tags=RV;PM;SLO;NSM;REF;INT;ASP;LSD;OM
 
|CLNDSDB=MedGen:OMIM:Orphanet:SNOMED_CT; MedGen
 
|CLNDSDB=MedGen:OMIM:Orphanet:SNOMED_CT; MedGen
 
|CLNDSDBID=C0339277:122100:ORPHA98954:1674008; CN221809
 
|CLNDSDBID=C0339277:122100:ORPHA98954:1674008; CN221809
|CLNREVSTAT=single; not
+
|CLNREVSTAT=no_assertion_criteria_provided; no_assertion_provided
 
}}
 
}}
  
 
{{on chip | 23andMe v3}}
 
{{on chip | 23andMe v3}}
 
{{on chip | 23andMe v4}}
 
{{on chip | 23andMe v4}}

Revision as of 00:32, 15 July 2015

Orientationminus
Stabilizedminus
Geno Mag Summary
(T;T) 0 common in clinvar
Make rs58918655(G;G)
Make rs58918655(G;T)
ReferenceGRCh37 37.1/132
Chromosome17
Position39023020
GeneKRT12
is asnp
is mentioned by
dbSNPrs58918655
dbSNP (classic)rs58918655
ClinGenrs58918655
ebirs58918655
HLIrs58918655
Exacrs58918655
Gnomadrs58918655
Varsomers58918655
LitVarrs58918655
Maprs58918655
PheGenIrs58918655
Biobankrs58918655
1000 genomesrs58918655
hgdprs58918655
ensemblrs58918655
geneviewrs58918655
scholarrs58918655
googlers58918655
pharmgkbrs58918655
gwascentralrs58918655
openSNPrs58918655
23andMers58918655
SNPshotrs58918655
SNPdbers58918655
MSV3drs58918655
GWAS Ctlgrs58918655
Max Magnitude0
OMIM601687
Desc
Variant0006
Relatedalso


ClinVar
Risk rs58918655(G;G)
Alt rs58918655(G;G)
Reference Rs58918655(T;T)
Significance Pathogenic
Disease Meesman's corneal dystrophy not provided
Variation info
Gene KRT12 LOC105371777
CLNDBN Meesman's corneal dystrophy not provided
Reversed 1
HGVS NC_000017.11:g.40866768A>C
CLNSRC OMIM Allelic Variant
CLNACC RCV000008388.3, RCV000056425.1,