Gs1036
From SNPedia
| Gs1036 | |
|---|---|
| Magnitude | 1.2 |
| Repute | |
| Summary | Mitochondrial Haplogroup H4a1a1 |
| Criteria | Gs1036/criteria |
This is the genoset for a mitochondrial DNA haplogroup. H4a1a1 is a subclade of H4a1a.
Contents
Criteria[edit]
- Defining SNPs for N
- A10398A, rs2853826(A;A)
- T10873T, rs2857284(T;T)
- G15301G, rs28573847(G;G) OR i3001523(G;G)
- A8701A, i3000759(A;A)
- T9540T, rs2248727(T;T) OR i3001497(T;T)
This will be set to require only one of these as confirmation of downstream N status.
- Defining SNPs for R
- C12705C, rs2854122(C;C)
- C16223C
Nether of these is on the 23andMe V2 Chip.
- Defining SNPs for R0
- G11719G, rs2853495(G;G) OR i3001044(G;G)
- A73A, i3001587(A;A)
73A will be excluded downstream of HV as it frequently back mutates.
- Defining SNPs for HV
- C14766C
This is not on the 23andMe V2 Chip.
- Defining SNPs for H
- A2706A, rs2854128(A;A)
- C7028C, rs2015062(C;C)
This will be set to require only one of these to confirm H status.
- Defining SNPs for H4
- C3992T, rs41402945(T;T) OR i3001460(T;T)
- T5004C, rs41419549(C;C) OR i3001469(C;C)
- G9123A, i3000806(A;A)
This will require only two of the three SNPs to deal with possible back mutations.
- Defining SNPs for H4a
- A4024G, i1000001(G;G) OR i3001461(G;G)
- C14365T, rs2853815(T;T)
- A14582G, rs41354845(G;G)
This will require only two of the three SNPs to deal with possible back mutations.
- Defining SNPs for H4a1
- G8269A, rs8896(A;A)
- Defining SNPs for H4a1a
- A10044G, rs41362547(G;G)
- Defining SNPs for H4a1a1
- A73G, i3001587(G;G)
Criteria Code[edit]
and(
gs1001,
atleast(2,
or(rs41402945(T;T),i3001460(T;T)),
or(rs41419549(C;C),i3001469(C;C)),
i3000806(A;A)),
atleast(2,
or(i1000001(G;G),i3001461(G;G)),
rs2853815(T;T),
rs41354845(G;G)),
rs8896(A;A),
rs41362547(G;G),
i3001587(G;G),
)
See Also[edit]
