rs10499197
From SNPedia
| Orientation | plus |
| Stabilized | plus |
| Geno | Mag | Summary |
|---|---|---|
| (T;T) | 0 | common genotype |
| Make rs10499197(G;G) |
| Make rs10499197(G;T) |
| Reference | GRCh38 38.1/141 |
| Chromosome | 6 |
| Position | 137811379 |
| is a | snp |
| is | mentioned by |
| dbSNP | rs10499197 |
| dbSNP (classic) | rs10499197 |
| ClinGen | rs10499197 |
| ebi | rs10499197 |
| HLI | rs10499197 |
| Exac | rs10499197 |
| Gnomad | rs10499197 |
| Varsome | rs10499197 |
| LitVar | rs10499197 |
| Map | rs10499197 |
| PheGenI | rs10499197 |
| Biobank | rs10499197 |
| 1000 genomes | rs10499197 |
| hgdp | rs10499197 |
| ensembl | rs10499197 |
| geneview | rs10499197 |
| scholar | rs10499197 |
| rs10499197 | |
| pharmgkb | rs10499197 |
| gwascentral | rs10499197 |
| openSNP | rs10499197 |
| 23andMe | rs10499197 |
| SNPshot | rs10499197 |
| SNPdbe | rs10499197 |
| MSV3d | rs10499197 |
| GWAS Ctlg | rs10499197 |
| GMAF | 0.01745 |
| Max Magnitude | 0 |
| ? | (G;G) (G;T) (T;T) | 28 |
|---|---|---|
|
| ||
| GWAS snp | |
|---|---|
| PMID | [PMID 23740937 ]
|
| Trait | Systemic lupus erythematosus and Systemic sclerosis |
| Title | A systemic sclerosis and systemic lupus erythematosus pan-meta-GWAS reveals new shared susceptibility loci. |
| Risk Allele | |
| P-val | 2E-9 |
| Odds Ratio | 1.64 [NR] |
[PMID 17903302] Framingham Heart Study 100K Project: genome-wide associations for blood pressure and arterial stiffness.
[PMID 19165918] Genetic variants near TNFAIP3 on 6q23 are associated with systemic lupus erythematosus.
[PMID 19387456] Meta-analysis and imputation identifies a 109 kb risk haplotype spanning TNFAIP3 associated with lupus nephritis and hematologic manifestations.
