rs1052030
From SNPedia
| Orientation | plus |
| Stabilized | plus |
| Geno | Mag | Summary |
|---|---|---|
| (T;T) | 0 | common in clinvar |
| Make rs1052030(C;C) |
| Make rs1052030(C;T) |
| Reference | GRCh38 38.1/141 |
| Chromosome | 11 |
| Position | 77142737 |
| Gene | MYO7A |
| is a | snp |
| is | mentioned by |
| dbSNP | rs1052030 |
| dbSNP (classic) | rs1052030 |
| ClinGen | rs1052030 |
| ebi | rs1052030 |
| HLI | rs1052030 |
| Exac | rs1052030 |
| Gnomad | rs1052030 |
| Varsome | rs1052030 |
| LitVar | rs1052030 |
| Map | rs1052030 |
| PheGenI | rs1052030 |
| Biobank | rs1052030 |
| 1000 genomes | rs1052030 |
| hgdp | rs1052030 |
| ensembl | rs1052030 |
| geneview | rs1052030 |
| scholar | rs1052030 |
| rs1052030 | |
| pharmgkb | rs1052030 |
| gwascentral | rs1052030 |
| openSNP | rs1052030 |
| 23andMe | rs1052030 |
| SNPshot | rs1052030 |
| SNPdbe | rs1052030 |
| MSV3d | rs1052030 |
| GWAS Ctlg | rs1052030 |
| GMAF | 0.4853 |
| Max Magnitude | 0 |
aka c.47T>C (p.Leu16Ser) and also c.47T>A (p.Leu16Ter); the former is benign, while the latter is pathogenic for a recessive form of deafness (type 2, Usher syndrome)
| ? | (C;C) (C;T) (T;T) | 28 |
|---|---|---|
|
| ||
| ClinVar | |
|---|---|
| Risk | rs1052030(A;A) rs1052030(C;C) |
| Alt | rs1052030(A;A) rs1052030(C;C) |
| Reference | Rs1052030(T;T) |
| Significance | Probable-non-pathogenic |
| Disease | not specified not provided Nonsyndromic Hearing Loss Retinitis pigmentosa-deafness syndrome Nonsyndromic Hearing Loss |
| Variation | info |
| Gene | MYO7A |
| CLNDBN | not specified not provided Nonsyndromic Hearing Loss, Dominant Retinitis pigmentosa-deafness syndrome Nonsyndromic Hearing Loss, Recessive |
| Reversed | 0 |
| HGVS | NC_000011.9:g.76853783T>C |
| CLNSRC | UniProtKB (protein) |
| CLNACC | RCV000036163.4, RCV000132571.1, RCV000261128.1, RCV000318604.1, RCV000353260.1, |
[PMID 18776599
] Susceptibility genes for gentamicin-induced vestibular dysfunction.
Categories:
- Is a snp
- In dbSNP
- SNPs on chromosome 11
- Has genotype
- Has population
- On chip 23andMe v1
- On chip 23andMe v2
- On chip 23andMe v3
- On chip 23andMe v4
- On chip Affy GenomeWide 6
- On chip Affy500k
- On chip Ancestry v2
- On chip HumanOmni1Quad
- On chip Illumina Human 1M
- On chip 23andMe v5
- On chip Ancestry v2c
- On chip Ancestry v2d
