rs11145338
From SNPedia
| Orientation | plus |
| Stabilized | plus |
| Make rs11145338(A;A) |
| Make rs11145338(A;T) |
| Make rs11145338(T;T) |
| Reference | GRCh38 38.1/141 |
| Chromosome | 9 |
| Position | 77211411 |
| Gene | VPS13A |
| is a | snp |
| is | mentioned by |
| dbSNP | rs11145338 |
| dbSNP (classic) | rs11145338 |
| ClinGen | rs11145338 |
| ebi | rs11145338 |
| HLI | rs11145338 |
| Exac | rs11145338 |
| Gnomad | rs11145338 |
| Varsome | rs11145338 |
| LitVar | rs11145338 |
| Map | rs11145338 |
| PheGenI | rs11145338 |
| Biobank | rs11145338 |
| 1000 genomes | rs11145338 |
| hgdp | rs11145338 |
| ensembl | rs11145338 |
| geneview | rs11145338 |
| scholar | rs11145338 |
| rs11145338 | |
| pharmgkb | rs11145338 |
| gwascentral | rs11145338 |
| openSNP | rs11145338 |
| 23andMe | rs11145338 |
| SNPshot | rs11145338 |
| SNPdbe | rs11145338 |
| MSV3d | rs11145338 |
| GWAS Ctlg | rs11145338 |
| GMAF | 0.2548 |
| Max Magnitude | 0 |
| ? | (A;A) (A;T) (T;T) | 28 |
|---|---|---|
|
| ||
| Rs11145338 | |
|---|---|
| PubMed | [PMID 17158188 ]
|
| Affy Probeset | SNP_A-2150945 |
| Affy Orientation | reverse |
| On GW 5.0 | |
| Alleles A/B | A/T |
| Ancestral | A |
| Population | Caucasian (USA, Australia) |
| Allele | A |
| Case Freq. | |
| Control Freq. | |
| Odds Ratio Het | |
| Odds Ratio Hom | |
| Odds Ratio All | 1.35 |
| Disease | Substance dependence, Nicotine (SD-N) |
rs11145338 is in linkage disequilibrium with a polymorphism that increases susceptibility to Substance dependence, Nicotine 1.35 times for carriers of the A allele [PMID 17158188]
