rs117160567
From SNPedia
Orientation | plus |
Stabilized | plus |
Geno | Mag | Summary |
---|---|---|
(A;A) | 0 | common in clinvar |
(A;C) | 2 | Variant of uncertain significance wrt Tay Sachs |
Make rs117160567(C;C) |
Reference | GRCh38.p7 38.3/150 |
Chromosome | 15 |
Position | 72351103 |
Gene | HEXA |
is a | snp |
is | mentioned by |
dbSNP | rs117160567 |
dbSNP (classic) | rs117160567 |
ClinGen | rs117160567 |
ebi | rs117160567 |
HLI | rs117160567 |
Exac | rs117160567 |
Gnomad | rs117160567 |
Varsome | rs117160567 |
LitVar | rs117160567 |
Map | rs117160567 |
PheGenI | rs117160567 |
Biobank | rs117160567 |
1000 genomes | rs117160567 |
hgdp | rs117160567 |
ensembl | rs117160567 |
geneview | rs117160567 |
scholar | rs117160567 |
rs117160567 | |
pharmgkb | rs117160567 |
gwascentral | rs117160567 |
openSNP | rs117160567 |
23andMe | rs117160567 |
SNPshot | rs117160567 |
SNPdbe | rs117160567 |
MSV3d | rs117160567 |
GWAS Ctlg | rs117160567 |
Max Magnitude | 2 |
aka c.672+30T>G
Although reported in ClinVar as pathogenic for Tay Sachs, the consensus seems to be that this variant is likely to be benign, because it's seen at a higher frequency in general and because minor homozygotes have been observed in large-scale sequencing projects. An additional discussion leaning towards this same conclusion can be found in [PMID 22723944]
ClinVar | |
---|---|
Risk | rs117160567(C;C) |
Alt | rs117160567(C;C) |
Reference | Rs117160567(A;A) |
Significance | Probable-non-pathogenic |
Disease | not specified Tay-Sachs disease |
Variation | info |
Gene | HEXA |
CLNDBN | not specified Tay-Sachs disease |
Reversed | 0 |
HGVS | NC_000015.9:g.72643444A>C |
CLNSRC | |
CLNACC | RCV000250930.1, RCV000416442.1, |