rs117160567
From SNPedia
| Orientation | plus |
| Stabilized | plus |
| Geno | Mag | Summary |
|---|---|---|
| (A;A) | 0 | common in clinvar |
| (A;C) | 2 | Variant of uncertain significance wrt Tay Sachs |
| Make rs117160567(C;C) |
| Reference | GRCh38.p7 38.3/150 |
| Chromosome | 15 |
| Position | 72351103 |
| Gene | HEXA |
| is a | snp |
| is | mentioned by |
| dbSNP | rs117160567 |
| dbSNP (classic) | rs117160567 |
| ClinGen | rs117160567 |
| ebi | rs117160567 |
| HLI | rs117160567 |
| Exac | rs117160567 |
| Gnomad | rs117160567 |
| Varsome | rs117160567 |
| LitVar | rs117160567 |
| Map | rs117160567 |
| PheGenI | rs117160567 |
| Biobank | rs117160567 |
| 1000 genomes | rs117160567 |
| hgdp | rs117160567 |
| ensembl | rs117160567 |
| geneview | rs117160567 |
| scholar | rs117160567 |
| rs117160567 | |
| pharmgkb | rs117160567 |
| gwascentral | rs117160567 |
| openSNP | rs117160567 |
| 23andMe | rs117160567 |
| SNPshot | rs117160567 |
| SNPdbe | rs117160567 |
| MSV3d | rs117160567 |
| GWAS Ctlg | rs117160567 |
| Max Magnitude | 2 |
aka c.672+30T>G
Although reported in ClinVar as pathogenic for Tay Sachs, the consensus seems to be that this variant is likely to be benign, because it's seen at a higher frequency in general and because minor homozygotes have been observed in large-scale sequencing projects. An additional discussion leaning towards this same conclusion can be found in [PMID 22723944
]
| ClinVar | |
|---|---|
| Risk | rs117160567(C;C) |
| Alt | rs117160567(C;C) |
| Reference | Rs117160567(A;A) |
| Significance | Probable-non-pathogenic |
| Disease | not specified Tay-Sachs disease |
| Variation | info |
| Gene | HEXA |
| CLNDBN | not specified Tay-Sachs disease |
| Reversed | 0 |
| HGVS | NC_000015.9:g.72643444A>C |
| CLNSRC | |
| CLNACC | RCV000250930.1, RCV000416442.1, |
