rs1208
Orientation | plus |
Stabilized | plus |
Geno | Mag | Summary |
---|---|---|
(A;A) | 0 | |
(G;G) | 0 | common in clinvar |
Make rs1208(A;G) |
Reference | GRCh38 38.1/141 |
Chromosome | 8 |
Position | 18400806 |
Gene | NAT2 |
is a | snp |
is | mentioned by |
dbSNP | rs1208 |
dbSNP (classic) | rs1208 |
ClinGen | rs1208 |
ebi | rs1208 |
HLI | rs1208 |
Exac | rs1208 |
Gnomad | rs1208 |
Varsome | rs1208 |
LitVar | rs1208 |
Map | rs1208 |
PheGenI | rs1208 |
Biobank | rs1208 |
1000 genomes | rs1208 |
hgdp | rs1208 |
ensembl | rs1208 |
geneview | rs1208 |
scholar | rs1208 |
rs1208 | |
pharmgkb | rs1208 |
gwascentral | rs1208 |
openSNP | rs1208 |
23andMe | rs1208 |
SNPshot | rs1208 |
SNPdbe | rs1208 |
MSV3d | rs1208 |
GWAS Ctlg | rs1208 |
GMAF | 0.3145 |
Max Magnitude | 0 |
? | (A;A) (A;G) (G;G) | 28 |
---|---|---|
|
rs1208 is a SNP in the NAT2 gene, potentially encoding a variant detoxifying protein known as an N-acetyltransferase, but which NAT2 variant depends on which other NAT2 SNPs were also inherited. See the discussion of the NAT2 gene for a more complete explanation.
The risk allele for this SNP is rs1208(G).
[PMID 21989592] Interactions of cigarette smoking with NAT2 polymorphisms impact rheumatoid arthritis risk in African Americans
[PMID 22092036] Accuracy of various human NAT2 SNP genotyping panels to infer rapid, intermediate and slow acetylator phenotypes
[PMID 20459474] Can we predict top-level sports performance in power vs endurance events? A genetic approach
ClinVar | |
---|---|
Risk | Rs1208(A;A) |
Alt | Rs1208(A;A) |
Reference | Rs1208(G;G) |
Significance | Drug-response |
Disease | Slow acetylator due to N-acetyltransferase enzyme variant |
Variation | info |
Gene | NAT2 |
CLNDBN | Slow acetylator due to N-acetyltransferase enzyme variant |
Reversed | 0 |
HGVS | NC_000008.10:g.18258316G\x3d |
CLNSRC | OMIM Allelic Variant |
CLNACC | RCV000000760.1, |
[PMID 14724163] Analysis of candidate modifier loci for the severity of colonic familial adenomatous polyposis, with evidence for the importance of the N-acetyl transferases.
[PMID 16112301] NAT2 slow acetylation, GSTM1 null genotype, and risk of bladder cancer: results from the Spanish Bladder Cancer Study and meta-analyses.
[PMID 16416399] Deciphering the ancient and complex evolutionary history of human arylamine N-acetyltransferase genes.
[PMID 16847422] Genetic variation in N-acetyltransferase 1 (NAT1) and 2 (NAT2) and risk of non-Hodgkin lymphoma.
[PMID 18547414] Genotyping panel for assessing response to cancer chemotherapy.
[PMID 18664443] Unraveling ambiguous NAT2 genotyping data.
[PMID 18680467] Structure/function evaluations of single nucleotide polymorphisms in human N-acetyltransferase 2.
[PMID 18773084] Multiple advantageous amino acid variants in the NAT2 gene in human populations.
[PMID 18936436] Prevalence in the United States of selected candidate gene variants: Third National Health and Nutrition Examination Survey, 1991-1994.
[PMID 20043821] Evaluating NAT2PRED for inferring the individual acetylation status from unphased genotype data.
[PMID 2068113] Diverse point mutations in the human gene for polymorphic N-acetyltransferase.
[PMID 6721992] A simple test for acetylator phenotype using caffeine.
[PMID 8807666] NAT2*12A (803A-->G) codes for rapid arylamine n-acetylation in humans.
[PMID 24939416] CYP1A1 Ile462Val polymorphism and colorectal cancer risk in Polish patients
[PMID 25798622] Identification and validation of N-acetyltransferase 2 as an insulin sensitivity gene