rs121908027
From SNPedia
Orientation | plus |
Stabilized | plus |
Geno | Mag | Summary |
---|---|---|
(-;-) | 7 | familial hypercholesterolemia |
(-;GGT) | 3.5 | familial hypercholesterolemia |
(-;TGG) | 5 | Familial Hypercholesterolemia |
(GGT;GGT) | 0 | common in complete genomics |
(TGG;TGG) | 0 | common in clinvar |
Reference | GRCh38 38.1/141 |
Chromosome | 19 |
Position | 11105558 |
Gene | LDLR |
is a | snp |
is | mentioned by |
dbSNP | rs121908027 |
dbSNP (classic) | rs121908027 |
ClinGen | rs121908027 |
ebi | rs121908027 |
HLI | rs121908027 |
Exac | rs121908027 |
Gnomad | rs121908027 |
Varsome | rs121908027 |
LitVar | rs121908027 |
Map | rs121908027 |
PheGenI | rs121908027 |
Biobank | rs121908027 |
1000 genomes | rs121908027 |
hgdp | rs121908027 |
ensembl | rs121908027 |
geneview | rs121908027 |
scholar | rs121908027 |
rs121908027 | |
pharmgkb | rs121908027 |
gwascentral | rs121908027 |
openSNP | rs121908027 |
23andMe | rs121908027 |
SNPshot | rs121908027 |
SNPdbe | rs121908027 |
MSV3d | rs121908027 |
GWAS Ctlg | rs121908027 |
Max Magnitude | 7 |
rs121908027, also known as 652delGGT, G197del, among other terms, is a mutation in the LDLR gene on chromosome 19. This mutation is known as FH Lithuania, since it appears to be a founder mutation for familial hypercholesterolemia originating in the 14th century. It is reported to the be most common FH mutation in Ashkenazi Jews, found in up to 35% of FH families in Israel.[PMID 1867200]
rs121908027 is named i4000356 in 23andMe data.
ClinVar | |
---|---|
Risk | Rs121908027(-;-) Rs121908027(TGG;TGG) |
Alt | Rs121908027(-;-) Rs121908027(TGG;TGG) |
Reference | Rs121908027(GGT;GGT) |
Significance | Other |
Disease | Familial hypercholesterolemia not provided |
Variation | info |
Gene | LDLR |
CLNDBN | Familial hypercholesterolemia not provided |
Reversed | 0 |
HGVS | NC_000019.9:g.11216236_11216238delTGG |
CLNSRC | LDLR @ LOVD OMIM Allelic Variant |
CLNACC | RCV000211647.5, RCV000489033.1, |