rs121908027
From SNPedia
| Orientation | plus |
| Stabilized | plus |
| Geno | Mag | Summary |
|---|---|---|
| (-;-) | 7 | familial hypercholesterolemia |
| (-;GGT) | 3.5 | familial hypercholesterolemia |
| (-;TGG) | 5 | Familial Hypercholesterolemia |
| (GGT;GGT) | 0 | common in complete genomics |
| (TGG;TGG) | 0 | common in clinvar |
| Reference | GRCh38 38.1/141 |
| Chromosome | 19 |
| Position | 11105558 |
| Gene | LDLR |
| is a | snp |
| is | mentioned by |
| dbSNP | rs121908027 |
| dbSNP (classic) | rs121908027 |
| ClinGen | rs121908027 |
| ebi | rs121908027 |
| HLI | rs121908027 |
| Exac | rs121908027 |
| Gnomad | rs121908027 |
| Varsome | rs121908027 |
| LitVar | rs121908027 |
| Map | rs121908027 |
| PheGenI | rs121908027 |
| Biobank | rs121908027 |
| 1000 genomes | rs121908027 |
| hgdp | rs121908027 |
| ensembl | rs121908027 |
| geneview | rs121908027 |
| scholar | rs121908027 |
| rs121908027 | |
| pharmgkb | rs121908027 |
| gwascentral | rs121908027 |
| openSNP | rs121908027 |
| 23andMe | rs121908027 |
| SNPshot | rs121908027 |
| SNPdbe | rs121908027 |
| MSV3d | rs121908027 |
| GWAS Ctlg | rs121908027 |
| Max Magnitude | 7 |
rs121908027, also known as 652delGGT, G197del, among other terms, is a mutation in the LDLR gene on chromosome 19. This mutation is known as FH Lithuania, since it appears to be a founder mutation for familial hypercholesterolemia originating in the 14th century. It is reported to the be most common FH mutation in Ashkenazi Jews, found in up to 35% of FH families in Israel.[PMID 1867200
]
rs121908027 is named i4000356 in 23andMe data.
| ClinVar | |
|---|---|
| Risk | Rs121908027(-;-) Rs121908027(TGG;TGG) |
| Alt | Rs121908027(-;-) Rs121908027(TGG;TGG) |
| Reference | Rs121908027(GGT;GGT) |
| Significance | Other |
| Disease | Familial hypercholesterolemia not provided |
| Variation | info |
| Gene | LDLR |
| CLNDBN | Familial hypercholesterolemia not provided |
| Reversed | 0 |
| HGVS | NC_000019.9:g.11216236_11216238delTGG |
| CLNSRC | LDLR @ LOVD OMIM Allelic Variant |
| CLNACC | RCV000211647.5, RCV000489033.1, |
