rs12476364
From SNPedia
| Orientation | plus |
| Stabilized | plus |
| Geno | Mag | Summary |
|---|---|---|
| (A;G) | 6 | Lynch syndrome, pathogenic mutation |
| (C;G) | 6 | Lynch syndrome, pathogenic mutation |
| (G;G) | 0 | common in clinvar |
| (G;T) | 6 | Lynch syndrome |
| Make rs12476364(A;A) |
| Reference | GRCh38 38.1/141 |
| Chromosome | 2 |
| Position | 47416295 |
| Gene | MSH2 |
| is a | snp |
| is | mentioned by |
| dbSNP | rs12476364 |
| dbSNP (classic) | rs12476364 |
| ClinGen | rs12476364 |
| ebi | rs12476364 |
| HLI | rs12476364 |
| Exac | rs12476364 |
| Gnomad | rs12476364 |
| Varsome | rs12476364 |
| LitVar | rs12476364 |
| Map | rs12476364 |
| PheGenI | rs12476364 |
| Biobank | rs12476364 |
| 1000 genomes | rs12476364 |
| hgdp | rs12476364 |
| ensembl | rs12476364 |
| geneview | rs12476364 |
| scholar | rs12476364 |
| rs12476364 | |
| pharmgkb | rs12476364 |
| gwascentral | rs12476364 |
| openSNP | rs12476364 |
| 23andMe | rs12476364 |
| SNPshot | rs12476364 |
| SNPdbe | rs12476364 |
| MSV3d | rs12476364 |
| GWAS Ctlg | rs12476364 |
| Max Magnitude | 6 |
| ? | (A;A) (A;G) (G;G) | 28 |
|---|---|---|
|
| ||
| ClinVar | |
|---|---|
| Risk | rs12476364(A;A) rs12476364(C;C) rs12476364(T;T) |
| Alt | rs12476364(A;A) rs12476364(C;C) rs12476364(T;T) |
| Reference | Rs12476364(G;G) |
| Significance | Pathogenic |
| Disease | Lynch syndrome Hereditary cancer-predisposing syndrome |
| Variation | info |
| Gene | MSH2 |
| CLNDBN | Lynch syndrome Hereditary cancer-predisposing syndrome |
| Reversed | 0 |
| HGVS | NC_000002.11:g.47643434G>A; NC_000002.11:g.47643434G>C; NC_000002.11:g.47643434G>T |
| CLNSRC | International Society for Gastrointestinal Hereditary Tumours |
| CLNACC | RCV000076757.2, RCV000076758.2, RCV000491758.1, RCV000468897.1, RCV000491423.1, |
