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rs137852283

From SNPedia

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Stabilizedplus
Geno Mag Summary
(C;C) 5.5 Hemophilia B (severity varies)
(C;G) 3.5 Carrier of a Hemophilia B mutation
(G;G) 0 common in clinvar
(G;T) 3.5 Carrier of a Hemophilia B mutation
(T;T) 5.5 Hemophilia B (severity varies)
ReferenceGRCh38 38.1/141
ChromosomeX
Position139561836
GeneF9
is asnp
is mentioned by
dbSNPrs137852283
dbSNP (classic)rs137852283
ClinGenrs137852283
ebirs137852283
HLIrs137852283
Exacrs137852283
Gnomadrs137852283
Varsomers137852283
LitVarrs137852283
Maprs137852283
PheGenIrs137852283
Biobankrs137852283
1000 genomesrs137852283
hgdprs137852283
ensemblrs137852283
geneviewrs137852283
scholarrs137852283
googlers137852283
pharmgkbrs137852283
gwascentralrs137852283
openSNPrs137852283
23andMers137852283
SNPshotrs137852283
SNPdbers137852283
MSV3drs137852283
GWAS Ctlgrs137852283
Max Magnitude5.5
OMIM300746
Desc
Variant0111
Relatedalso

Changes in this SNP indicate a mutation which occurs at an amino acid evolutionarily conserved in the factor IX gene of all known species. [1]

1151 G>T Factor IX Padua Variant
Results in Arg338Leu (also known as Arg384Leu). This is a gain of function, missense mutation results in hyperfunctional Factor IX protein, increasing risk for thromboembolism.

[PMID 19846852OA-icon.png] X-linked thrombophilia with a mutant factor IX (factor IX Padua).
A novel X-linked 1151G>T point mutation was found in a single Italian family in 2009. This variant resulted in hyperfunctional factor IX proteins associated with thrombophilia, specifically venous thromboembolism (VTE). While the level of this mutant factor IX protein in plasma was normal, the clotting activity in the proband was approximately eight times the normal level.
This mutation was screened for in 200 controls and 200 patients with a documented VTE from the same geographic area as the proband, however none of these controls or patients had the R338L allele.

[PMID 20605624] Prevalence of Factor IX-R338L (Factor IX Padua) in a cohort of patients with venous thromboembolism and mild elevation of factor IX levels.
No R338L mutations were found in this Brazilian study which evaluated 19 patients with documented VTE and 132 controls.

[PMID 21802712] Factor IX-R338L (Factor IX Padua) screening in a Dutch population of sibpairs with early onset venous thromboembolism.
Evaluated 201 Dutch sibpairs with 2, 3 or 4 affected siblings with at least one objectively confirmed VTE (n= 438) without any Factor IX Padua mutations found.

1151 G>C
Results in Arg338Pro (also known as Arg384Pro). This missense mutation results in Hereditary factor IX deficiency disease.

[PMID 8365725] Recurrent mutations in the factor IX gene: founder effect or repeat de novo events. Investigation of the German haemophilia B population and review of de novo mutations.
Documented first case of this mutation in a hemizygous male with a published factor IX coagulant of 10%.

[PMID 8178822OA-icon.png] The rates of G:C-->T:A and G:C-->C:G transversions at CpG dinucleotides in the human factor IX gene.
Documented single case of a female heterozygous for this mutation, with 16% Factor IX activity.

OMIM300746
Desc
Variant0112
Relatedalso
ClinVar
Risk Rs137852283(C;C) Rs137852283(T;T)
Alt Rs137852283(C;C) Rs137852283(T;T)
Reference Rs137852283(G;G)
Significance Pathogenic
Disease Hereditary factor IX deficiency disease Thrombophilia
Variation info
Gene F9
CLNDBN Hereditary factor IX deficiency disease Thrombophilia, X-linked, due to factor IX defect
Reversed 0
HGVS NC_000023.10:g.138643995G>C; NC_000023.10:g.138643995G>T
CLNSRC OMIM Allelic Variant UniProtKB (protein)
CLNACC RCV000011413.6, RCV000011414.5, RCV000119810.2,