rs137853336
From SNPedia
| Orientation | plus |
| Stabilized | plus |
| Geno | Mag | Summary |
|---|---|---|
| (C;C) | 0 | common in clinvar |
| (C;T) | 2 | associated with MODY1; maturity onset of diabetes in the young (type 1) |
| Make rs137853336(T;T) |
| Reference | GRCh38 38.1/141 |
| Chromosome | 20 |
| Position | 44413714 |
| Gene | HNF4A |
| is a | snp |
| is | mentioned by |
| dbSNP | rs137853336 |
| dbSNP (classic) | rs137853336 |
| ClinGen | rs137853336 |
| ebi | rs137853336 |
| HLI | rs137853336 |
| Exac | rs137853336 |
| Gnomad | rs137853336 |
| Varsome | rs137853336 |
| LitVar | rs137853336 |
| Map | rs137853336 |
| PheGenI | rs137853336 |
| Biobank | rs137853336 |
| 1000 genomes | rs137853336 |
| hgdp | rs137853336 |
| ensembl | rs137853336 |
| geneview | rs137853336 |
| scholar | rs137853336 |
| rs137853336 | |
| pharmgkb | rs137853336 |
| gwascentral | rs137853336 |
| openSNP | rs137853336 |
| 23andMe | rs137853336 |
| SNPshot | rs137853336 |
| SNPdbe | rs137853336 |
| MSV3d | rs137853336 |
| GWAS Ctlg | rs137853336 |
| Max Magnitude | 2 |
aka c.406C>T (p.Arg136Trp or R136W); known in older literature as c.340C>T (p.Arg114Trp or R114W)
A 2019 study of >300,000 UK BioBank participants of European ancestry concluded that while this variant is associated with a higher risk of diabetes (OR 2.9, CI: 1.7-5.0, p=3x1-e-4), the penetrance was estimated to be <10%. Therefore, if this variant is seen in a diabetic, it might be the primary cause, but incidental discovery of the variant in a healthy (non-diabetic) individual is of little predictive value.[PMID 30665703
]
See also OMIM 600281.0003
| ClinVar | |
|---|---|
| Risk | rs137853336(G;G) rs137853336(T;T) |
| Alt | rs137853336(G;G) rs137853336(T;T) |
| Reference | Rs137853336(C;C) |
| Significance | Pathogenic |
| Disease | Maturity-onset diabetes of the young |
| Variation | info |
| Gene | HNF4A |
| CLNDBN | Maturity-onset diabetes of the young, type 1 |
| Reversed | 0 |
| HGVS | NC_000020.10:g.43042354C>T |
| CLNSRC | OMIM Allelic Variant UniProtKB (protein) |
| CLNACC | RCV000009792.6, |
