rs137886900
From SNPedia
| Orientation | plus |
| Stabilized | plus |
| Geno | Mag | Summary |
|---|---|---|
| (A;A) | 5 | TK-2 related mitochondrial depletion syndrome (myopathic) |
| (A;G) | 3 | Carrier of a mitochondrial depletion syndrome mutation |
| (G;G) | 0 | common in clinvar |
| Reference | GRCh38 38.1/141 |
| Chromosome | 16 |
| Position | 66517207 |
| Gene | TK2 |
| is a | snp |
| is | mentioned by |
| dbSNP | rs137886900 |
| dbSNP (classic) | rs137886900 |
| ClinGen | rs137886900 |
| ebi | rs137886900 |
| HLI | rs137886900 |
| Exac | rs137886900 |
| Gnomad | rs137886900 |
| Varsome | rs137886900 |
| LitVar | rs137886900 |
| Map | rs137886900 |
| PheGenI | rs137886900 |
| Biobank | rs137886900 |
| 1000 genomes | rs137886900 |
| hgdp | rs137886900 |
| ensembl | rs137886900 |
| geneview | rs137886900 |
| scholar | rs137886900 |
| rs137886900 | |
| pharmgkb | rs137886900 |
| gwascentral | rs137886900 |
| openSNP | rs137886900 |
| 23andMe | rs137886900 |
| SNPshot | rs137886900 |
| SNPdbe | rs137886900 |
| MSV3d | rs137886900 |
| GWAS Ctlg | rs137886900 |
| Max Magnitude | 5 |
Reported as pathogenic in ClinVar for TK2 related mitochondrial depletion syndrome (myopathic form), a recessively inherited condition
| ClinVar | |
|---|---|
| Risk | Rs137886900(A;A) rs137886900(C;C) rs137886900(T;T) |
| Alt | Rs137886900(A;A) rs137886900(C;C) rs137886900(T;T) |
| Reference | Rs137886900(G;G) |
| Significance | Pathogenic |
| Disease | Mitochondrial DNA depletion syndrome 2 Progressive external ophthalmoplegia with mitochondrial DNA deletions |
| Variation | info |
| Gene | TK2 |
| CLNDBN | Mitochondrial DNA depletion syndrome 2 Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal recessive 3 |
| Reversed | 0 |
| HGVS | NC_000016.9:g.66551110G>A; NC_000016.9:g.66551110G>C |
| CLNSRC | OMIM Allelic Variant UniProtKB (protein) |
| CLNACC | RCV000032251.4, RCV000239457.1, RCV000032250.1, |
