rs138925964
From SNPedia
| Orientation | plus |
| Stabilized | plus |
| Geno | Mag | Summary |
|---|---|---|
| (C;C) | 0 | common/normal |
| (C;T) | 3 | 2-4x higher risk for venous thromboembolism (clots) |
| (T;T) | 6 | Clotting issues likely in infants |
| Reference | GRCh38.p2 38.2/147 |
| Chromosome | 3 |
| Position | 93879279 |
| Gene | PROS1 |
| is a | snp |
| is | mentioned by |
| dbSNP | rs138925964 |
| dbSNP (classic) | rs138925964 |
| ClinGen | rs138925964 |
| ebi | rs138925964 |
| HLI | rs138925964 |
| Exac | rs138925964 |
| Gnomad | rs138925964 |
| Varsome | rs138925964 |
| LitVar | rs138925964 |
| Map | rs138925964 |
| PheGenI | rs138925964 |
| Biobank | rs138925964 |
| 1000 genomes | rs138925964 |
| hgdp | rs138925964 |
| ensembl | rs138925964 |
| geneview | rs138925964 |
| scholar | rs138925964 |
| rs138925964 | |
| pharmgkb | rs138925964 |
| gwascentral | rs138925964 |
| openSNP | rs138925964 |
| 23andMe | rs138925964 |
| SNPshot | rs138925964 |
| SNPdbe | rs138925964 |
| MSV3d | rs138925964 |
| GWAS Ctlg | rs138925964 |
| Max Magnitude | 6 |
rs138925964, also known as c.1528G>A, p.Val510Met and V510M, represents a fairly rare mutation in the PROS1 gene on chromosome 3.
Based on exome sequencing, a 2016 report concludes that the rs138925964(T) allele is an African-descent specific risk factor for venous thromboembolism, also known as VTE. Individuals carrying this allele are reported to be at 2 - 4 fold higher VTE risk.10.1002/mgg3.226
A news report about this finding and other ancestry-specific risk factors is here.
| ClinVar | |
|---|---|
| Risk | rs138925964(G;G) Rs138925964(T;T) |
| Alt | rs138925964(G;G) Rs138925964(T;T) |
| Reference | Rs138925964(C;C) |
| Significance | Other |
| Disease | Protein S deficiency Thrombophilia due to protein S deficiency |
| Variation | info |
| Gene | PROS1 |
| CLNDBN | Protein S deficiency Thrombophilia due to protein S deficiency, autosomal recessive |
| Reversed | 0 |
| HGVS | NC_000003.11:g.93598123C>T |
| CLNSRC | Stanford University |
| CLNACC | RCV000148749.2, RCV000458043.1, |
