rs142763740
From SNPedia
| Orientation | plus |
| Stabilized | plus |
| Geno | Mag | Summary |
|---|---|---|
| (G;G) | 0 | common in clinvar |
| Make rs142763740(A;A) |
| Make rs142763740(A;G) |
| Reference | GRCh38.p2 38.2/147 |
| Chromosome | 22 |
| Position | 28694066 |
| Gene | CHEK2 |
| is a | snp |
| is | mentioned by |
| dbSNP | rs142763740 |
| dbSNP (classic) | rs142763740 |
| ClinGen | rs142763740 |
| ebi | rs142763740 |
| HLI | rs142763740 |
| Exac | rs142763740 |
| Gnomad | rs142763740 |
| Varsome | rs142763740 |
| LitVar | rs142763740 |
| Map | rs142763740 |
| PheGenI | rs142763740 |
| Biobank | rs142763740 |
| 1000 genomes | rs142763740 |
| hgdp | rs142763740 |
| ensembl | rs142763740 |
| geneview | rs142763740 |
| scholar | rs142763740 |
| rs142763740 | |
| pharmgkb | rs142763740 |
| gwascentral | rs142763740 |
| openSNP | rs142763740 |
| 23andMe | rs142763740 |
| SNPshot | rs142763740 |
| SNPdbe | rs142763740 |
| MSV3d | rs142763740 |
| GWAS Ctlg | rs142763740 |
| Max Magnitude | 0 |
Mentioned as a pathogenic/likely pathogenic mutation associated with cancer predisposition in [PMID 26681312
]
Ancestry v2 data almost always shows the (A;A) genotype for this SNP in their user's data, though, so that's clearly incorrect.
| ClinVar | |
|---|---|
| Risk | rs142763740(A;A) |
| Alt | rs142763740(A;A) |
| Reference | Rs142763740(G;G) |
| Significance | Probable-Pathogenic |
| Disease | Hereditary cancer-predisposing syndrome Familial cancer of breast Breast and colorectal cancer not provided Colorectal cancer Neoplasm of breast |
| Variation | info |
| Gene | CHEK2 |
| CLNDBN | Hereditary cancer-predisposing syndrome Familial cancer of breast Breast and colorectal cancer, susceptibility to not provided Colorectal cancer Neoplasm of breast |
| Reversed | 0 |
| HGVS | NC_000022.10:g.29090054G>A |
| CLNSRC | |
| CLNACC | RCV000116001.8, RCV000198554.4, RCV000210077.1, RCV000212465.3, RCV000259876.1, RCV000317389.1, |
