rs142763740
From SNPedia
Orientation | plus |
Stabilized | plus |
Geno | Mag | Summary |
---|---|---|
(G;G) | 0 | common in clinvar |
Make rs142763740(A;A) |
Make rs142763740(A;G) |
Reference | GRCh38.p2 38.2/147 |
Chromosome | 22 |
Position | 28694066 |
Gene | CHEK2 |
is a | snp |
is | mentioned by |
dbSNP | rs142763740 |
dbSNP (classic) | rs142763740 |
ClinGen | rs142763740 |
ebi | rs142763740 |
HLI | rs142763740 |
Exac | rs142763740 |
Gnomad | rs142763740 |
Varsome | rs142763740 |
LitVar | rs142763740 |
Map | rs142763740 |
PheGenI | rs142763740 |
Biobank | rs142763740 |
1000 genomes | rs142763740 |
hgdp | rs142763740 |
ensembl | rs142763740 |
geneview | rs142763740 |
scholar | rs142763740 |
rs142763740 | |
pharmgkb | rs142763740 |
gwascentral | rs142763740 |
openSNP | rs142763740 |
23andMe | rs142763740 |
SNPshot | rs142763740 |
SNPdbe | rs142763740 |
MSV3d | rs142763740 |
GWAS Ctlg | rs142763740 |
Max Magnitude | 0 |
Mentioned as a pathogenic/likely pathogenic mutation associated with cancer predisposition in [PMID 26681312]
Ancestry v2 data almost always shows the (A;A) genotype for this SNP in their user's data, though, so that's clearly incorrect.
ClinVar | |
---|---|
Risk | rs142763740(A;A) |
Alt | rs142763740(A;A) |
Reference | Rs142763740(G;G) |
Significance | Probable-Pathogenic |
Disease | Hereditary cancer-predisposing syndrome Familial cancer of breast Breast and colorectal cancer not provided Colorectal cancer Neoplasm of breast |
Variation | info |
Gene | CHEK2 |
CLNDBN | Hereditary cancer-predisposing syndrome Familial cancer of breast Breast and colorectal cancer, susceptibility to not provided Colorectal cancer Neoplasm of breast |
Reversed | 0 |
HGVS | NC_000022.10:g.29090054G>A |
CLNSRC | |
CLNACC | RCV000116001.8, RCV000198554.4, RCV000210077.1, RCV000212465.3, RCV000259876.1, RCV000317389.1, |