rs1551398
From SNPedia
| Orientation | minus |
| Stabilized | minus |
| Make rs1551398(C;C) |
| Make rs1551398(C;T) |
| Make rs1551398(T;T) |
| Reference | GRCh38 38.1/141 |
| Chromosome | 8 |
| Position | 125527809 |
| Gene | LOC105375746 |
| is a | snp |
| is | mentioned by |
| dbSNP | rs1551398 |
| dbSNP (classic) | rs1551398 |
| ClinGen | rs1551398 |
| ebi | rs1551398 |
| HLI | rs1551398 |
| Exac | rs1551398 |
| Gnomad | rs1551398 |
| Varsome | rs1551398 |
| LitVar | rs1551398 |
| Map | rs1551398 |
| PheGenI | rs1551398 |
| Biobank | rs1551398 |
| 1000 genomes | rs1551398 |
| hgdp | rs1551398 |
| ensembl | rs1551398 |
| geneview | rs1551398 |
| scholar | rs1551398 |
| rs1551398 | |
| pharmgkb | rs1551398 |
| gwascentral | rs1551398 |
| openSNP | rs1551398 |
| 23andMe | rs1551398 |
| SNPshot | rs1551398 |
| SNPdbe | rs1551398 |
| MSV3d | rs1551398 |
| GWAS Ctlg | rs1551398 |
| GMAF | 0.4311 |
| Max Magnitude | 0 |
| ? | (C;C) (C;T) (T;T) | 28 |
|---|---|---|
|
| ||
| GWAS snp | |
|---|---|
| PMID | [PMID 18587394 ]
|
| Trait | Crohn's disease |
| Title | Genome-wide assocation defines more than 30 distinct susceptibility loci for Crohn's disease |
| Risk Allele | A |
| P-val | 5.0000000000000001E-9 |
| Odds Ratio | 1.08 [NR] |
DeCode reports that rs1551398 is associated with susceptibility to Crohn's disease. [PMID 18587394]
[PMID 19068216] Investigation of Crohn's disease risk loci in ulcerative colitis further defines their molecular relationship.
[PMID 21304977] An investigation of genome-wide studies reported susceptibility loci for ulcerative colitis shows limited replication in north Indians.
[PMID 23543094] Testing for associations between loci and environmental gradients using latent factor mixed models.
