rs16886397
From SNPedia
| Orientation | plus |
| Stabilized | plus |
| Make rs16886397(A;A) |
| Make rs16886397(A;G) |
| Make rs16886397(G;G) |
| Reference | GRCh38 38.1/142 |
| Chromosome | 5 |
| Position | 56838449 |
| Gene | MAP3K1 |
| is a | snp |
| is | mentioned by |
| dbSNP | rs16886397 |
| dbSNP (classic) | rs16886397 |
| ClinGen | rs16886397 |
| ebi | rs16886397 |
| HLI | rs16886397 |
| Exac | rs16886397 |
| Gnomad | rs16886397 |
| Varsome | rs16886397 |
| LitVar | rs16886397 |
| Map | rs16886397 |
| PheGenI | rs16886397 |
| Biobank | rs16886397 |
| 1000 genomes | rs16886397 |
| hgdp | rs16886397 |
| ensembl | rs16886397 |
| geneview | rs16886397 |
| scholar | rs16886397 |
| rs16886397 | |
| pharmgkb | rs16886397 |
| gwascentral | rs16886397 |
| openSNP | rs16886397 |
| 23andMe | rs16886397 |
| SNPshot | rs16886397 |
| SNPdbe | rs16886397 |
| MSV3d | rs16886397 |
| GWAS Ctlg | rs16886397 |
| Max Magnitude | 0 |
| ? | (A;A) (A;G) (G;G) | 28 |
|---|---|---|
|
| ||
| GWAS snp | |
|---|---|
| PMID | [PMID 24493630 ]
|
| Trait | Breast cancer (early onset) |
| Title | A genome-wide association study of early-onset breast cancer identifies PFKM as a novel breast cancer gene and supports a common genetic spectrum for breast cancer at any age. |
| Risk Allele | |
| P-val | 4E-12 |
| Odds Ratio | 1.36 [1.25-1.49] |
[PMID 25529635] Fine-scale mapping of the 5q11.2 breast cancer locus reveals at least three independent risk variants regulating MAP3K1
