rs1738074
| Orientation | minus |
| Stabilized | minus |
| Make rs1738074(A;A) |
| Make rs1738074(A;G) |
| Make rs1738074(G;G) |
| Reference | GRCh38 38.1/141 |
| Chromosome | 6 |
| Position | 159044945 |
| Gene | LOC105378083, LOC107986664, TAGAP |
| is a | snp |
| is | mentioned by |
| dbSNP | rs1738074 |
| dbSNP (classic) | rs1738074 |
| ClinGen | rs1738074 |
| ebi | rs1738074 |
| HLI | rs1738074 |
| Exac | rs1738074 |
| Gnomad | rs1738074 |
| Varsome | rs1738074 |
| LitVar | rs1738074 |
| Map | rs1738074 |
| PheGenI | rs1738074 |
| Biobank | rs1738074 |
| 1000 genomes | rs1738074 |
| hgdp | rs1738074 |
| ensembl | rs1738074 |
| geneview | rs1738074 |
| scholar | rs1738074 |
| rs1738074 | |
| pharmgkb | rs1738074 |
| gwascentral | rs1738074 |
| openSNP | rs1738074 |
| 23andMe | rs1738074 |
| SNPshot | rs1738074 |
| SNPdbe | rs1738074 |
| MSV3d | rs1738074 |
| GWAS Ctlg | rs1738074 |
| GMAF | 0.4412 |
| Max Magnitude | 0 |
| ? | (A;A) (A;G) (G;G) | 28 |
|---|---|---|
|
| ||
| GWAS | |
|---|---|
| SNP | rs1738074 |
| PubMedID | [PMID 18311140 ]
|
| Condition | Celiac disease |
| Gene | TAGAP |
| Risk Allele | A |
| pValue | 7.00E-008 |
| OR | 1.21 |
| 95% CI | 1.13-1.30 |
[PMID 19693089] Four novel coeliac disease regions replicated in an association study of a Swedish-Norwegian family cohort
| GWAS snp | |
|---|---|
| PMID | [PMID 20190752]
|
| Trait | Celiac disease |
| Title | Multiple common variants for celiac disease influencing immune gene expression |
| Risk Allele | A |
| P-val | 3E-15 |
| Odds Ratio | 1.16 [1.12-1.21] |
| GWAS snp | |
|---|---|
| PMID | [PMID 22190364]
|
| Trait | |
| Title | Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci. |
| Risk Allele | C |
| P-val | 4E-7 |
| Odds Ratio | 1.1500 None |
| GWAS snp | |
|---|---|
| PMID | [PMID 21833088]
|
| Trait | |
| Title | Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis. |
| Risk Allele | G |
| P-val | 7E-15 |
| Odds Ratio | 1.1300 [1.12-1.15] |
[PMID 22087237] Improving the estimation of celiac disease sibling risk by non-HLA genes
[PMID 22127930] Association of single-nucleotide polymorphisms in CCR6, TAGAP, and TNFAIP3 with rheumatoid arthritis in African Americans
[PMID 18713140] Translational mini-review series on the immunogenetics of gut disease: immunogenetics of coeliac disease.
[PMID 18853133] Gene variants influencing measures of inflammation or predisposing to autoimmune and inflammatory diseases are not associated with the risk of type 2 diabetes.
[PMID 19073967] Shared and distinct genetic variants in type 1 diabetes and celiac disease.
[PMID 21383967] Meta-analysis of genome-wide association studies in celiac disease and rheumatoid arthritis identifies fourteen non-HLA shared loci.
[PMID 21390051] Fine mapping the TAGAP risk locus in rheumatoid arthritis.
[PMID 22592522] Association of celiac disease genes with inflammatory bowel disease in Finnish and Swedish patients.
[PMID 28356229] Association of rs1738074 polymorphism of TAGAP gene with susceptibility to multiple sclerosis in the Iranian population.
