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rs1880676

From SNPedia

Orientationplus
Stabilizedplus
Geno Mag Summary
(G;G) 0 common in clinvar
Make rs1880676(A;A)
Make rs1880676(A;G)
ReferenceGRCh38 38.1/142
Chromosome10
Position49616071
GeneCHAT
is asnp
is mentioned by
dbSNPrs1880676
dbSNP (classic)rs1880676
ClinGenrs1880676
ebirs1880676
HLIrs1880676
Exacrs1880676
Gnomadrs1880676
Varsomers1880676
LitVarrs1880676
Maprs1880676
PheGenIrs1880676
Biobankrs1880676
1000 genomesrs1880676
hgdprs1880676
ensemblrs1880676
geneviewrs1880676
scholarrs1880676
googlers1880676
pharmgkbrs1880676
gwascentralrs1880676
openSNPrs1880676
23andMers1880676
SNPshotrs1880676
SNPdbers1880676
MSV3drs1880676
GWAS Ctlgrs1880676
GMAF0.1524
Max Magnitude0
? (A;A) (A;G) (G;G) 28


[PMID 21507424] Genetic variation in the choline O-acetyltransferase gene in depression and Alzheimer's disease: the VITA and Milano studies

[PMID 16223550OA-icon.png] Genetic variation in the choline acetyltransferase (CHAT) gene may be associated with the risk of Alzheimer's disease.

[PMID 16385451OA-icon.png] A scan of chromosome 10 identifies a novel locus showing strong association with late-onset Alzheimer disease.

[PMID 16480703] ApoE-epsilon 4-dependent association of the choline acetyltransferase gene polymorphisms (2384G>A and 1882G>A) with Alzheimer's disease.

[PMID 17503482] Choline acetyltransferase variants and their influence in schizophrenia and olanzapine response.

[PMID 18072279OA-icon.png] Combining fMRI and SNP data to investigate connections between brain function and genetics using parallel ICA.

[PMID 18091754OA-icon.png] Regional association-based fine-mapping for sodium-lithium countertransport on chromosome 10.

[PMID 18165968OA-icon.png] Identification of pharmacogenetic markers in smoking cessation therapy.

[PMID 20383528OA-icon.png] Replication and extension of association of choline acetyltransferase with nicotine dependence in European and African American smokers.


ClinVar
Risk rs1880676(A;A)
Alt rs1880676(A;A)
Reference Rs1880676(G;G)
Significance Non-pathogenic
Disease not specified
Variation info
Gene CHAT
CLNDBN not specified
Reversed 0
HGVS NC_000010.10:g.50824117G>A
CLNSRC
CLNACC RCV000454676.1,