rs201540674
From SNPedia
| Orientation | plus |
| Stabilized | plus |
| Geno | Mag | Summary |
|---|---|---|
| (A;G) | 3 | Carrier of a dyskeratosis congenita (recessive) mutation |
| (G;G) | 0 | common in clinvar |
| Make rs201540674(A;A) |
| Reference | GRCh38 38.1/142 |
| Chromosome | 20 |
| Position | 63695619 |
| Gene | RTEL1, RTEL1-TNFRSF6B, TNFRSF6B |
| is a | snp |
| is | mentioned by |
| dbSNP | rs201540674 |
| dbSNP (classic) | rs201540674 |
| ClinGen | rs201540674 |
| ebi | rs201540674 |
| HLI | rs201540674 |
| Exac | rs201540674 |
| Gnomad | rs201540674 |
| Varsome | rs201540674 |
| LitVar | rs201540674 |
| Map | rs201540674 |
| PheGenI | rs201540674 |
| Biobank | rs201540674 |
| 1000 genomes | rs201540674 |
| hgdp | rs201540674 |
| ensembl | rs201540674 |
| geneview | rs201540674 |
| scholar | rs201540674 |
| rs201540674 | |
| pharmgkb | rs201540674 |
| gwascentral | rs201540674 |
| openSNP | rs201540674 |
| 23andMe | rs201540674 |
| SNPshot | rs201540674 |
| SNPdbe | rs201540674 |
| MSV3d | rs201540674 |
| GWAS Ctlg | rs201540674 |
| Max Magnitude | 3 |
aka c.2402G>A (p.Arg801His or R80H)
Note that this variant is also called c.3791G>A (p.Arg1264His or R1264H) when numbering using a different reference sequence is used; for an example, see the 2014 paper that concluded that this variant is likely to be a founder mutation in Ashkenazi Jews and should be included in carrier screens.[PMID 25047097]
news article from January 2019 discusses the search for a cure
| ClinVar | |
|---|---|
| Risk | rs201540674(A;A) |
| Alt | rs201540674(A;A) |
| Reference | Rs201540674(G;G) |
| Significance | Other |
| Disease | Dyskeratosis congenita Pulmonary fibrosis and/or bone marrow failure Idiopathic fibrosing alveolitis |
| Variation | info |
| Gene | RTEL1-TNFRSF6B RTEL1 TNFRSF6B |
| CLNDBN | Dyskeratosis congenita, autosomal recessive, 5 Pulmonary fibrosis and/or bone marrow failure, telomere-related, 3 Idiopathic fibrosing alveolitis, chronic form |
| Reversed | 0 |
| HGVS | NC_000020.10:g.62326972G>A |
| CLNSRC | OMIM Allelic Variant |
| CLNACC | RCV000034860.8, RCV000201217.3, RCV000201662.1, |
