rs2205960
| Orientation | plus |
| Stabilized | plus |
| Make rs2205960(G;G) |
| Make rs2205960(G;T) |
| Make rs2205960(T;T) |
| Reference | GRCh38 38.1/141 |
| Chromosome | 1 |
| Position | 173222336 |
| Gene | TNFSF4 |
| is a | snp |
| is | mentioned by |
| dbSNP | rs2205960 |
| dbSNP (classic) | rs2205960 |
| ClinGen | rs2205960 |
| ebi | rs2205960 |
| HLI | rs2205960 |
| Exac | rs2205960 |
| Gnomad | rs2205960 |
| Varsome | rs2205960 |
| LitVar | rs2205960 |
| Map | rs2205960 |
| PheGenI | rs2205960 |
| Biobank | rs2205960 |
| 1000 genomes | rs2205960 |
| hgdp | rs2205960 |
| ensembl | rs2205960 |
| geneview | rs2205960 |
| scholar | rs2205960 |
| rs2205960 | |
| pharmgkb | rs2205960 |
| gwascentral | rs2205960 |
| openSNP | rs2205960 |
| 23andMe | rs2205960 |
| SNPshot | rs2205960 |
| SNPdbe | rs2205960 |
| MSV3d | rs2205960 |
| GWAS Ctlg | rs2205960 |
| GMAF | 0.191 |
| Max Magnitude | 0 |
| ? | (G;G) (G;T) (T;T) | 28 |
|---|---|---|
|
| ||
[PMID 19357697
] Association of BANK1 and TNFSF4 with systemic lupus erythematosus in Hong Kong Chinese.
| GWAS snp | |
|---|---|
| PMID | [PMID 19838193] |
| Trait | Systemic lupus erythematosus |
| Title | Genome-wide association study in a Chinese Han population identifies nine new susceptibility loci for systemic lupus erythematosus |
| Risk Allele | A |
| P-val | 3E-32 |
| Odds Ratio | 1.46 [1.37-1.56] |
[PMID 19778912] Association of TNFSF4 (OX40L) polymorphisms with susceptibility to systemic sclerosis
[PMID 22422496] Independent Replication and Metaanalysis of Association Studies Establish TNFSF4 as a Susceptibility Gene Preferentially Associated with the Subset of Anticentromere-positive Patients with Systemic Sclerosis
[PMID 19838195] A large-scale replication study identifies TNIP1, PRDM1, JAZF1, UHRF1BP1 and IL10 as risk loci for systemic lupus erythematosus.
[PMID 21379322] Risk alleles for systemic lupus erythematosus in a large case-control collection and associations with clinical subphenotypes.
[PMID 21408207] Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production.
| GWAS snp | |
|---|---|
| PMID | [PMID 23273568]
|
| Trait | Systemic lupus erythematosus |
| Title | Meta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians. |
| Risk Allele | T |
| P-val | 3E-12 |
| Odds Ratio | 1.36 |
[PMID 23622253] Association of TNFSF4 polymorphisms with susceptibility to primary Sjögren's syndrome and primary biliary cirrhosis in a Chinese Han population
[PMID 23874208] Trans-ancestral studies fine map the SLE-susceptibility locus TNFSF4
[PMID 22820624] Associations between TNFSF4 and TRAF1-C5 gene polymorphisms and systemic lupus erythematosus: a meta-analysis.
[PMID 22850862] Association of TNFSF4 polymorphisms with systemic lupus erythematosus: a meta-analysis.
[PMID 27519474] TNFSF4 polymorphisms are associated with systemic lupus erythematosus in the Malaysian population.
[PMID 29214033] Lupus-related single nucleotide polymorphisms and risk of diffuse large B-cell lymphoma.
[PMID 32208776] Associations between TNFSF4 gene polymorphisms (rs2205960 G > A, rs704840 T > G and rs844648 G > A) and susceptibility to autoimmune diseases in Asians: a meta-analysis.
