rs2517713
From SNPedia
| Orientation | minus |
| Stabilized | minus |
| Make rs2517713(A;A) |
| Make rs2517713(A;C) |
| Make rs2517713(C;C) |
| Reference | GRCh38 38.1/141 |
| Chromosome | 6 |
| Position | 29950322 |
| Gene | HCP5P3 |
| is a | snp |
| is | mentioned by |
| dbSNP | rs2517713 |
| dbSNP (classic) | rs2517713 |
| ClinGen | rs2517713 |
| ebi | rs2517713 |
| HLI | rs2517713 |
| Exac | rs2517713 |
| Gnomad | rs2517713 |
| Varsome | rs2517713 |
| LitVar | rs2517713 |
| Map | rs2517713 |
| PheGenI | rs2517713 |
| Biobank | rs2517713 |
| 1000 genomes | rs2517713 |
| hgdp | rs2517713 |
| ensembl | rs2517713 |
| geneview | rs2517713 |
| scholar | rs2517713 |
| rs2517713 | |
| pharmgkb | rs2517713 |
| gwascentral | rs2517713 |
| openSNP | rs2517713 |
| 23andMe | rs2517713 |
| SNPshot | rs2517713 |
| SNPdbe | rs2517713 |
| MSV3d | rs2517713 |
| GWAS Ctlg | rs2517713 |
| GMAF | 0.3237 |
| Max Magnitude | 0 |
| ? | (A;A) (A;C) (C;C) | 28 |
|---|---|---|
|
| ||
| GWAS snp | |
|---|---|
| PMID | [PMID 19664746 ]
|
| Trait | Nasopharyngeal Carcinoma |
| Title | Genome-wide Association Study Reveals Multiple Nasopharyngeal Carcinoma-Associated Loci within the HLA Region at Chromosome 6p21. |
| Risk Allele | A |
| P-val | 4E-20 |
| Odds Ratio | 1.88 [1.65-2.15] |
[PMID 18519066] Detection, imputation, and association analysis of small deletions and null alleles on oligonucleotide arrays.
[PMID 21283797] Identification of genes with allelic imbalance on 6p associated with nasopharyngeal carcinoma in southern Chinese.
[PMID 26307051] Heterogeneity revealed through meta-analysis might link geographical differences with nasopharyngeal carcinoma incidence in Han Chinese populations
