rs25533
From SNPedia
| Orientation | minus |
| Stabilized | minus |
| Geno | Mag | Summary |
|---|---|---|
| (T;T) | 0 | common in complete genomics |
| Make rs25533(C;C) |
| Make rs25533(C;T) |
| Reference | GRCh38 38.1/142 |
| Chromosome | 17 |
| Position | 30235874 |
| Gene | LOC105371720, SLC6A4 |
| is a | snp |
| is | mentioned by |
| dbSNP | rs25533 |
| dbSNP (classic) | rs25533 |
| ClinGen | rs25533 |
| ebi | rs25533 |
| HLI | rs25533 |
| Exac | rs25533 |
| Gnomad | rs25533 |
| Varsome | rs25533 |
| LitVar | rs25533 |
| Map | rs25533 |
| PheGenI | rs25533 |
| Biobank | rs25533 |
| 1000 genomes | rs25533 |
| hgdp | rs25533 |
| ensembl | rs25533 |
| geneview | rs25533 |
| scholar | rs25533 |
| rs25533 | |
| pharmgkb | rs25533 |
| gwascentral | rs25533 |
| openSNP | rs25533 |
| 23andMe | rs25533 |
| SNPshot | rs25533 |
| SNPdbe | rs25533 |
| MSV3d | rs25533 |
| GWAS Ctlg | rs25533 |
| GMAF | 0.08494 |
| Max Magnitude | 0 |
[PMID 19560507] Interaction of serotonin-related genes affects short-term antidepressant response in major depressive disorder
[PMID 15361494
] Association between a functional polymorphism in the serotonin transporter gene and diarrhoea predominant irritable bowel syndrome in women.
[PMID 15995945] Allelic heterogeneity at the serotonin transporter locus (SLC6A4) confers susceptibility to autism and rigid-compulsive behaviors.
[PMID 21172166] Pharmacogenetics of antidepressant response.
[PMID 23484320] [Relationship between genetic polymorphisms of 3 SNP loci in 5-HTT gene and paranoid schizophrenia]
| ClinVar | |
|---|---|
| Risk | rs25533(C;C) |
| Alt | rs25533(C;C) |
| Reference | Rs25533(T;T) |
| Significance | Probable-non-pathogenic |
| Disease | Behavior disorder |
| Variation | info |
| Gene | SLC6A4 |
| CLNDBN | Behavior disorder |
| Reversed | 1 |
| HGVS | NC_000017.10:g.28562892A>G |
| CLNSRC | |
| CLNACC | RCV000322648.1, |
