rs2860580
From SNPedia
| Orientation | minus |
| Stabilized | minus |
| Make rs2860580(C;C) |
| Make rs2860580(C;T) |
| Make rs2860580(T;T) |
| Reference | GRCh38 38.1/141 |
| Chromosome | 6 |
| Position | 29938914 |
| Gene | HCG4P5 |
| is a | snp |
| is | mentioned by |
| dbSNP | rs2860580 |
| dbSNP (classic) | rs2860580 |
| ClinGen | rs2860580 |
| ebi | rs2860580 |
| HLI | rs2860580 |
| Exac | rs2860580 |
| Gnomad | rs2860580 |
| Varsome | rs2860580 |
| LitVar | rs2860580 |
| Map | rs2860580 |
| PheGenI | rs2860580 |
| Biobank | rs2860580 |
| 1000 genomes | rs2860580 |
| hgdp | rs2860580 |
| ensembl | rs2860580 |
| geneview | rs2860580 |
| scholar | rs2860580 |
| rs2860580 | |
| pharmgkb | rs2860580 |
| gwascentral | rs2860580 |
| openSNP | rs2860580 |
| 23andMe | rs2860580 |
| SNPshot | rs2860580 |
| SNPdbe | rs2860580 |
| MSV3d | rs2860580 |
| GWAS Ctlg | rs2860580 |
| GMAF | 0.3802 |
| Max Magnitude | 0 |
| ? | (C;C) (C;T) (T;T) | 28 |
|---|---|---|
|
| ||
| GWAS snp | |
|---|---|
| PMID | [PMID 20512145] |
| Trait | Nasopharyngeal carcinoma |
| Title | A genome-wide association study of nasopharyngeal carcinoma identifies three new susceptibility loci. |
| Risk Allele | |
| P-val | 5E-67 |
| Odds Ratio | 1.72 [1.61-1.82] |
[PMID 18519066
] Detection, imputation, and association analysis of small deletions and null alleles on oligonucleotide arrays.
[PMID 27517745] Nasopharyngeal carcinoma risk prediction via salivary detection of host and Epstein-Barr virus genetic variants.
