rs28694718
From SNPedia
| Orientation | minus |
| Stabilized | minus |
| Geno | Mag | Summary |
|---|---|---|
| (A;A) | 1.5 | >2x higher risk for schizophrenia |
| (A;G) | 1.5 | 2x higher risk for schizophrenia |
| (G;G) | common |
| Reference | GRCh38 38.1/141 |
| Chromosome | X |
| Position | 1295332 |
| Gene | CSF2RA |
| is a | snp |
| is | mentioned by |
| dbSNP | rs28694718 |
| dbSNP (classic) | rs28694718 |
| ClinGen | rs28694718 |
| ebi | rs28694718 |
| HLI | rs28694718 |
| Exac | rs28694718 |
| Gnomad | rs28694718 |
| Varsome | rs28694718 |
| LitVar | rs28694718 |
| Map | rs28694718 |
| PheGenI | rs28694718 |
| Biobank | rs28694718 |
| 1000 genomes | rs28694718 |
| hgdp | rs28694718 |
| ensembl | rs28694718 |
| geneview | rs28694718 |
| scholar | rs28694718 |
| rs28694718 | |
| pharmgkb | rs28694718 |
| gwascentral | rs28694718 |
| openSNP | rs28694718 |
| 23andMe | rs28694718 |
| SNPshot | rs28694718 |
| SNPdbe | rs28694718 |
| MSV3d | rs28694718 |
| GWAS Ctlg | rs28694718 |
| GMAF | 0.2773 |
| Max Magnitude | 1.5 |
In the Pseudoautosomal region
rs28694718, located in intron 8 of the CSF2RA gene, is part of a haplotype block that has been reported in a whole genome association study to be associated with schizophrenia. (The other SNP in this block is rs28414810.)
The risk allele (oriented to the dbSNP entry) is (A); the odds ratio associated with this allele is 2.11. [PMID 17522711]
