rs28777
From SNPedia
| Orientation | plus |
| Stabilized | plus |
| Geno | Mag | Summary |
|---|---|---|
| (A;A) | 0 | common in complete genomics |
| Make rs28777(A;C) |
| Make rs28777(C;C) |
| Reference | GRCh38 38.1/141 |
| Chromosome | 5 |
| Position | 33958854 |
| Gene | SLC45A2 |
| is a | snp |
| is | mentioned by |
| dbSNP | rs28777 |
| dbSNP (classic) | rs28777 |
| ClinGen | rs28777 |
| ebi | rs28777 |
| HLI | rs28777 |
| Exac | rs28777 |
| Gnomad | rs28777 |
| Varsome | rs28777 |
| LitVar | rs28777 |
| Map | rs28777 |
| PheGenI | rs28777 |
| Biobank | rs28777 |
| 1000 genomes | rs28777 |
| hgdp | rs28777 |
| ensembl | rs28777 |
| geneview | rs28777 |
| scholar | rs28777 |
| rs28777 | |
| pharmgkb | rs28777 |
| gwascentral | rs28777 |
| openSNP | rs28777 |
| 23andMe | rs28777 |
| SNPshot | rs28777 |
| SNPdbe | rs28777 |
| MSV3d | rs28777 |
| GWAS Ctlg | rs28777 |
| GMAF | 0.4894 |
| Max Magnitude | 0 |
| ? | (A;A) (A;C) (C;C) | 28 |
|---|---|---|
|
| ||
| GWAS | |
|---|---|
| SNP | rs28777 |
| PubMedID | [PMID 18483556 ]
|
| Condition | Black vs. red hair color |
| Gene | MATP |
| Risk Allele | C |
| pValue | 9.00E-014 |
| OR | 0.46 |
| 95% CI | 0.34-0.58) decrease in hair color scor |
[PMID 19710684] Multiple pigmentation gene polymorphisms account for a substantial proportion of risk of cutaneous malignant melanoma
[PMID 19340012] Genome-wide association study of tanning phenotype in a population of European ancestry.
[PMID 21253569] Genome-wide association study SNPs in the human genome diversity project populations: does selection affect unlinked SNPs with shared trait associations?
[PMID 23543094] Testing for associations between loci and environmental gradients using latent factor mixed models.
