rs3130340
| Orientation | plus |
| Stabilized | plus |
| Geno | Mag | Summary |
|---|---|---|
| (T;T) | 0 |
| Make rs3130340(C;C) |
| Make rs3130340(C;T) |
| Reference | GRCh38 38.1/141 |
| Chromosome | 6 |
| Position | 32276850 |
| Gene | LOC101929163 |
| is a | snp |
| is | mentioned by |
| dbSNP | rs3130340 |
| dbSNP (classic) | rs3130340 |
| ClinGen | rs3130340 |
| ebi | rs3130340 |
| HLI | rs3130340 |
| Exac | rs3130340 |
| Gnomad | rs3130340 |
| Varsome | rs3130340 |
| LitVar | rs3130340 |
| Map | rs3130340 |
| PheGenI | rs3130340 |
| Biobank | rs3130340 |
| 1000 genomes | rs3130340 |
| hgdp | rs3130340 |
| ensembl | rs3130340 |
| geneview | rs3130340 |
| scholar | rs3130340 |
| rs3130340 | |
| pharmgkb | rs3130340 |
| gwascentral | rs3130340 |
| openSNP | rs3130340 |
| 23andMe | rs3130340 |
| SNPshot | rs3130340 |
| SNPdbe | rs3130340 |
| MSV3d | rs3130340 |
| GWAS Ctlg | rs3130340 |
| GMAF | 0.2498 |
| Max Magnitude | 0 |
| ? | (C;C) (C;T) (T;T) | 28 |
|---|---|---|
|
| ||
rs3130340 increases susceptibility to Bone mineral density variations, lower for carriers of the T allele [PMID 18445777]
rs3130340 increases susceptibility to Osteoporotic fractures for carriers of the T allele [PMID 18445777]
| GWAS | |
|---|---|
| SNP | rs3130340 |
| PubMedID | [PMID 18445777] |
| Condition | Bone mineral density (spine) |
| Gene | MHC, C6orf10 |
| Risk Allele | T |
| pValue | 1.00E-007 |
| OR | 0.1 |
| 95% CI | 0.06-0.13) SD decreas |
[PMID 21646926] Interactions of osteoporosis candidate genes for age at menarche, age at natural menopause, and maximal height in Han Chinese women
[PMID 22370887
] Are bone mineral density loci associated with hip osteoporotic fractures? A validation study on previously reported genome-wide association loci in a Chinese population
[PMID 19181680] Common variants in the region around Osterix are associated with bone mineral density and growth in childhood.
[PMID 20018075] Genome-wide association study of rheumatoid arthritis by a score test based on wavelet transformation.
