rs3131379

minus

Geno	Mag	Summary
(C;C)	0	common on affy axiom data

Make rs3131379(C;T)

Make rs3131379(T;T)

Reference

GRCh38 38.1/141

Chromosome

6

Position

31753256

Gene	MSH5, MSH5-SAPCD1

is a	snp
is	mentioned by
dbSNP	rs3131379
dbSNP (classic)	rs3131379
ClinGen	rs3131379
ebi	rs3131379
HLI	rs3131379
Exac	rs3131379
Gnomad	rs3131379
Varsome	rs3131379
LitVar	rs3131379
Map	rs3131379
PheGenI	rs3131379
Biobank	rs3131379
1000 genomes	rs3131379
hgdp	rs3131379
ensembl	rs3131379
geneview	rs3131379
scholar	rs3131379
google	rs3131379
pharmgkb	rs3131379
gwascentral	rs3131379
openSNP	rs3131379
23andMe	rs3131379
SNPshot	rs3131379
SNPdbe	rs3131379
MSV3d	rs3131379
GWAS Ctlg	rs3131379

GMAF

0.04408

Max Magnitude

0

?

(C;C) (C;T) (T;T)

28

GWAS snp
PMID	[PMID 18204446 ]
Trait	Systemic lupus erythematosus in women
Title	Genome-wide association scan in women with systemic lupus erythematosus identifies susceptibility variants in ITGAM, PXK, KIAA1542 and other loci
Risk Allele	A
P-val	2E-52
Odds Ratio	2.36 [2.11-2.64]

OMIM	612593
Desc	LUNG CANCER SUSCEPTIBILITY 4; LNCR4
Variant
Related	also

[PMID 22382497 ] Lung Cancer and DNA Repair Genes: Multilevel Association Analysis from the International Lung Cancer Consortium

[PMID 18978787 ] Common 5p15.33 and 6p21.33 variants influence lung cancer risk.

[PMID 19197363 ] A genome-wide investigation of SNPs and CNVs in schizophrenia.

[PMID 19474294 ] Potential etiologic and functional implications of genome-wide association loci for human diseases and traits.

[PMID 19849816 ] Genetics of rheumatic disease.

[PMID 20017995 ] A principal-components-based clustering method to identify multiple variants associated with rheumatoid arthritis and arthritis-related autoantibodies.

[PMID 20805886 ] Unique DNA repair gene variations and potential associations with the primary antibody deficiency syndromes IgAD and CVID.

[PMID 21952918 ] Evidence for gene-gene epistatic interactions among susceptibility loci for systemic lupus erythematosus.

[PMID 25187487 ] Susceptibility loci for lung cancer are associated with mRNA levels of nearby genes in the lung