rs4635969
From SNPedia
| Orientation | minus |
| Stabilized | minus |
| Make rs4635969(C;C) |
| Make rs4635969(C;T) |
| Make rs4635969(T;T) |
| Reference | GRCh38 38.1/141 |
| Chromosome | 5 |
| Position | 1308437 |
| Gene | MIR4457 |
| is a | snp |
| is | mentioned by |
| dbSNP | rs4635969 |
| dbSNP (classic) | rs4635969 |
| ClinGen | rs4635969 |
| ebi | rs4635969 |
| HLI | rs4635969 |
| Exac | rs4635969 |
| Gnomad | rs4635969 |
| Varsome | rs4635969 |
| LitVar | rs4635969 |
| Map | rs4635969 |
| PheGenI | rs4635969 |
| Biobank | rs4635969 |
| 1000 genomes | rs4635969 |
| hgdp | rs4635969 |
| ensembl | rs4635969 |
| geneview | rs4635969 |
| scholar | rs4635969 |
| rs4635969 | |
| pharmgkb | rs4635969 |
| gwascentral | rs4635969 |
| openSNP | rs4635969 |
| 23andMe | rs4635969 |
| SNPshot | rs4635969 |
| SNPdbe | rs4635969 |
| MSV3d | rs4635969 |
| GWAS Ctlg | rs4635969 |
| GMAF | 0.1974 |
| Max Magnitude | 0 |
| ? | (C;C) (C;T) (T;T) | 28 |
|---|---|---|
|
| ||
| GWAS snp | |
|---|---|
| PMID | [PMID 20543847 ]
|
| Trait | Testicular germ cell cancer |
| Title | Variants near DMRT1, TERT and ATF7IP are associated with testicular germ cell cancer |
| Risk Allele | T |
| P-val | 1E-23 |
| Odds Ratio | 1.54 [1.33-1.79] |
[PMID 21617256] Variants in or near KITLG, BAK1, DMRT1, and TERT-CLPTM1L predispose to familial testicular germ cell tumour
[PMID 19836008] A genome-wide association study of lung cancer identifies a region of chromosome 5p15 associated with risk for adenocarcinoma.
[PMID 20101243] A genome-wide association study identifies pancreatic cancer susceptibility loci on chromosomes 13q22.1, 1q32.1 and 5p15.33.
[PMID 22213090] Fine-mapping of a region of chromosome 5p15.33 (TERT-CLPTM1L) suggests a novel locus in TERT and a CLPTM1L haplotype are associated with glioma susceptibility in a Chinese population.
[PMID 22523397] Telomerase reverse transcriptase locus polymorphisms and cancer risk: a field synopsis and meta-analysis.
| GWAS snp | |
|---|---|
| PMID | [PMID 23666240]
|
| Trait | Testicular germ cell tumor |
| Title | Identification of nine new susceptibility loci for testicular cancer, including variants near DAZL and PRDM14. |
| Risk Allele | T |
| P-val | 5E-24 |
| Odds Ratio | 1.39 [1.25-1.54] |
