rs564398
| Orientation | minus |
| Stabilized | minus |
| Make rs564398(A;A) |
| Make rs564398(A;G) |
| Make rs564398(G;G) |
| Reference | GRCh38 38.1/141 |
| Chromosome | 9 |
| Position | 22029548 |
| Gene | CDKN2B-AS1 |
| is a | snp |
| is | mentioned by |
| dbSNP | rs564398 |
| dbSNP (classic) | rs564398 |
| ClinGen | rs564398 |
| ebi | rs564398 |
| HLI | rs564398 |
| Exac | rs564398 |
| Gnomad | rs564398 |
| Varsome | rs564398 |
| LitVar | rs564398 |
| Map | rs564398 |
| PheGenI | rs564398 |
| Biobank | rs564398 |
| 1000 genomes | rs564398 |
| hgdp | rs564398 |
| ensembl | rs564398 |
| geneview | rs564398 |
| scholar | rs564398 |
| rs564398 | |
| pharmgkb | rs564398 |
| gwascentral | rs564398 |
| openSNP | rs564398 |
| 23andMe | rs564398 |
| SNPshot | rs564398 |
| SNPdbe | rs564398 |
| MSV3d | rs564398 |
| GWAS Ctlg | rs564398 |
| GMAF | 0.2048 |
| Max Magnitude | 0 |
| ? | (A;A) (A;G) (G;G) | 28 |
|---|---|---|
|
| ||
part 2 in the series mentions rs564398
| GWAS snp | |
|---|---|
| PMID | [PMID 17463249 ]
|
| Trait | Type 2 diabetes |
| Title | Replication of genome-wide association signals in UK samples reveals risk loci for type 2 diabetes |
| Risk Allele | T |
| P-val | 9.9999999999999995E-8 |
| Odds Ratio | 1.12 [1.07-1.17] |
[PMID 20043145] Improvements in glucose homeostasis in response to regular exercise are influenced by the PPARG Pro12Ala variant: results from the HERITAGE Family Study
[PMID 20616309] Coronary Artery Calcification and Its Relationship to Validated Genetic Variants for Diabetes Mellitus Assessed in the Heinz Nixdorf Recall Cohort
[PMID 21315566] Type 2 diabetes and polymorphisms on chromosome 9p21: A meta-analysis
[PMID 21414664] A polymorphism in the chromosome 9p21 ANRIL locus is associated to Philadelphia positive acute lymphoblastic leukemia
[PMID 17786212] Heterogeneity in meta-analyses of genome-wide association investigations.
[PMID 18368387] Strong association of common variants in the CDKN2A/CDKN2B region with type 2 diabetes in French Europids.
[PMID 18426861] Association analysis of type 2 diabetes Loci in type 1 diabetes.
[PMID 18443202] Association analysis in african americans of European-derived type 2 diabetes single nucleotide polymorphisms from whole-genome association studies.
[PMID 18461161] Post genome-wide association studies of novel genes associated with type 2 diabetes show gene-gene interaction and high predictive value.
[PMID 18469204] Implication of genetic variants near TCF7L2, SLC30A8, HHEX, CDKAL1, CDKN2A/B, IGF2BP2, and FTO in type 2 diabetes and obesity in 6,719 Asians.
[PMID 18533027] Worldwide population differentiation at disease-associated SNPs.
[PMID 18591388] Assessing the combined impact of 18 common genetic variants of modest effect sizes on type 2 diabetes risk.
[PMID 18633108] Common variants in CDKAL1, CDKN2A/B, IGF2BP2, SLC30A8, and HHEX/IDE genes are associated with type 2 diabetes and impaired fasting glucose in a Chinese Han population.
[PMID 18694974] Predicting type 2 diabetes based on polymorphisms from genome-wide association studies: a population-based study.
[PMID 18852197] Metabolic and cardiovascular traits: an abundance of recently identified common genetic variants.
[PMID 19002430] Type 2 diabetes-associated genetic variants discovered in the recent genome-wide association studies are related to gestational diabetes mellitus in the Korean population.
[PMID 19056611] Adiposity-related heterogeneity in patterns of type 2 diabetes susceptibility observed in genome-wide association data.
[PMID 19279076] Genetic predisposition, Western dietary pattern, and the risk of type 2 diabetes in men.
[PMID 19341491] Genome-based prediction of common diseases: methodological considerations for future research.
[PMID 19343170] INK4/ARF transcript expression is associated with chromosome 9p21 variants linked to atherosclerosis.
[PMID 19475673] Sequence variants on chromosome 9p21.3 confer risk for atherosclerotic stroke.
[PMID 19862325] PPARG, KCNJ11, CDKAL1, CDKN2A-CDKN2B, IDE-KIF11-HHEX, IGF2BP2 and SLC30A8 are associated with type 2 diabetes in a Chinese population.
[PMID 19931040] Simultaneous genotype calling and haplotype phasing improves genotype accuracy and reduces false-positive associations for genome-wide association studies.
[PMID 20017978] Influence of control selection in genome-wide association studies: the example of diabetes in the Framingham Heart Study.
[PMID 20018066] Epistatic interactions of CDKN2B-TCF7L2 for risk of type 2 diabetes and of CDKN2B-JAZF1 for triglyceride/high-density lipoprotein ratio longitudinal change: evidence from the Framingham Heart Study.
[PMID 20386740] Chromosome 9p21 SNPs Associated with Multiple Disease Phenotypes Correlate with ANRIL Expression.
[PMID 20550665] Association study of genetic variants in eight genes/loci with type 2 diabetes in a Han Chinese population.
[PMID 21278902] Genetic risk profiling for prediction of type 2 diabetes.
[PMID 21625859] Association between type 2 diabetes and CDKN2A/B: a meta-analysis study.
[PMID 22377712] Association between type 2 diabetes genetic susceptibility loci and visceral and subcutaneous fat area as determined by computed tomography.
[PMID 23361049] Common genetic variants in the 9p21 region and their associations with multiple tumours
[PMID 23462794] Identification of CpG-SNPs associated with type 2 diabetes and differential DNA methylation in human pancreatic islets.
[PMID 29432124] CDKN2A/B T2D GWAS Risk-SNPs Impact Locus Gene Expression and Proliferation in Human Islets.
