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rs602662

From SNPedia

Orientationplus
Stabilizedplus
Geno Mag Summary
(A;A) 2 Higher vitamin B12 levels
(G;G) 2 Lower vitamin B12 levels
Make rs602662(A;G)
ReferenceGRCh38 38.1/141
Chromosome19
Position48703728
GeneFUT2, LOC105447645
is asnp
is mentioned by
dbSNPrs602662
dbSNP (classic)rs602662
ClinGenrs602662
ebirs602662
HLIrs602662
Exacrs602662
Gnomadrs602662
Varsomers602662
LitVarrs602662
Maprs602662
PheGenIrs602662
Biobankrs602662
1000 genomesrs602662
hgdprs602662
ensemblrs602662
geneviewrs602662
scholarrs602662
googlers602662
pharmgkbrs602662
gwascentralrs602662
openSNPrs602662
23andMers602662
SNPshotrs602662
SNPdbers602662
MSV3drs602662
GWAS Ctlgrs602662
GMAF0.3375
Max Magnitude2
? (A;A) (A;G) (G;G) 28


GWAS snp
PMID [PMID 19303062OA-icon.png]
Trait Folate pathway vitamins
Title Genome-wide Association Study of Vitamin B6, Vitamin B12, Folate, and Homocysteine Blood Concentrations
Risk Allele A
P-val 3E-20
Odds Ratio 49.77 [37.09-62.45] pg/ml increase
OMIM612542
DescVITAMIN B12 PLASMA LEVEL QUANTITATIVE TRAIT LOCUS 1; B12QTL1
Variant
Relatedalso

[PMID 19744961OA-icon.png] Genome-wide significant predictors of metabolites in the one-carbon metabolism pathway

OMIM182100
Desc
Variant
Relatedalso


[PMID 18776911OA-icon.png] Common variants of FUT2 are associated with plasma vitamin B12 levels.


[PMID 18997004OA-icon.png] Widespread balancing selection and pathogen-driven selection at blood group antigen genes.


[PMID 20570966OA-icon.png] Fucosyltransferase 2 (FUT2) non-secretor status is associated with Crohn's disease.


[PMID 21115529OA-icon.png] Genetics and genomics of human ageing.


[PMID 22521342OA-icon.png] Extended analysis of a genome-wide association study in primary sclerosing cholangitis detects multiple novel risk loci.


[PMID 23201895] Common variant in FUT2 gene is associated with levels of vitamin B(12) in Indian population.


[PMID 28824326OA-icon.png] FUT2 genetic variants as predictors of tumor development with hepatocellular carcinoma.


[PMID 30376117OA-icon.png] FUT2 Genetic Variants and Reported Respiratory and Gastrointestinal Illnesses During Infancy.