rs6030171
From SNPedia
| Orientation | plus |
| Stabilized | plus |
| Make rs6030171(C;C) |
| Make rs6030171(C;T) |
| Make rs6030171(T;T) |
| Reference | GRCh38 38.1/141 |
| Chromosome | 20 |
| Position | 42365454 |
| Gene | PTPRT |
| is a | snp |
| is | mentioned by |
| dbSNP | rs6030171 |
| dbSNP (classic) | rs6030171 |
| ClinGen | rs6030171 |
| ebi | rs6030171 |
| HLI | rs6030171 |
| Exac | rs6030171 |
| Gnomad | rs6030171 |
| Varsome | rs6030171 |
| LitVar | rs6030171 |
| Map | rs6030171 |
| PheGenI | rs6030171 |
| Biobank | rs6030171 |
| 1000 genomes | rs6030171 |
| hgdp | rs6030171 |
| ensembl | rs6030171 |
| geneview | rs6030171 |
| scholar | rs6030171 |
| rs6030171 | |
| pharmgkb | rs6030171 |
| gwascentral | rs6030171 |
| openSNP | rs6030171 |
| 23andMe | rs6030171 |
| SNPshot | rs6030171 |
| SNPdbe | rs6030171 |
| MSV3d | rs6030171 |
| GWAS Ctlg | rs6030171 |
| GMAF | 0.4633 |
| Max Magnitude | 0 |
| ? | (C;C) (C;T) (T;T) | 28 |
|---|---|---|
|
| ||
| GWAS snp | |
|---|---|
| PMID | [PMID 23382691 ]
|
| Trait | IgG glycosylation |
| Title | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. |
| Risk Allele | C |
| P-val | 3E-6 |
| Odds Ratio | .15 [0.086-0.21] unit decrease |
