rs76947760
From SNPedia
| Orientation | plus |
| Stabilized | plus |
| Geno | Mag | Summary |
|---|---|---|
| (A;A) | 0 | common in clinvar |
| (A;T) | 3 | Carrier of a Brown-Vialetto-Van Laere syndrome mutation |
| (T;T) | 8 | Brown-Vialetto-Van Laere syndrome type 1 mutation; riboflavin treatment recommended |
| Reference | GRCh38.p2 38.2/147 |
| Chromosome | 20 |
| Position | 763523 |
| Gene | SLC52A3 |
| is a | snp |
| is | mentioned by |
| dbSNP | rs76947760 |
| dbSNP (classic) | rs76947760 |
| ClinGen | rs76947760 |
| ebi | rs76947760 |
| HLI | rs76947760 |
| Exac | rs76947760 |
| Gnomad | rs76947760 |
| Varsome | rs76947760 |
| LitVar | rs76947760 |
| Map | rs76947760 |
| PheGenI | rs76947760 |
| Biobank | rs76947760 |
| 1000 genomes | rs76947760 |
| hgdp | rs76947760 |
| ensembl | rs76947760 |
| geneview | rs76947760 |
| scholar | rs76947760 |
| rs76947760 | |
| pharmgkb | rs76947760 |
| gwascentral | rs76947760 |
| openSNP | rs76947760 |
| 23andMe | rs76947760 |
| SNPshot | rs76947760 |
| SNPdbe | rs76947760 |
| MSV3d | rs76947760 |
| GWAS Ctlg | rs76947760 |
| Max Magnitude | 8 |
aka c.1048T>A (p.Leu350Met)
Conflicting interpretations of pathogenicity exist for this variant in ClinVar; the most recent (by Invitae in 2017) indicates this variant is considered (by them) to be benign.
| ClinVar | |
|---|---|
| Risk | rs76947760(G;G) Rs76947760(T;T) |
| Alt | rs76947760(G;G) Rs76947760(T;T) |
| Reference | Rs76947760(A;A) |
| Significance | Pathogenic |
| Disease | Brown-Vialetto-Van Laere syndrome 1 |
| Variation | info |
| Gene | SLC52A3 |
| CLNDBN | Brown-Vialetto-Van Laere syndrome 1 |
| Reversed | 0 |
| HGVS | NC_000020.10:g.744167A>T |
| CLNSRC | UniProtKB (protein) |
| CLNACC | RCV000191969.1, |
