rs780936696
From SNPedia
| Orientation | plus |
| Stabilized | plus |
| Geno | Mag | Summary |
|---|---|---|
| (A;A) | 0 | common in clinvar |
| (A;T) | 3 | Carrier of a Canavan disease mutation |
| (T;T) | 8 | Canavan disease (predicted) |
| Reference | GRCh38.p2 38.2/144 |
| Chromosome | 17 |
| Position | 3481601 |
| Gene | ASPA, SPATA22 |
| is a | snp |
| is | mentioned by |
| dbSNP | rs780936696 |
| dbSNP (classic) | rs780936696 |
| ClinGen | rs780936696 |
| ebi | rs780936696 |
| HLI | rs780936696 |
| Exac | rs780936696 |
| Gnomad | rs780936696 |
| Varsome | rs780936696 |
| LitVar | rs780936696 |
| Map | rs780936696 |
| PheGenI | rs780936696 |
| Biobank | rs780936696 |
| 1000 genomes | rs780936696 |
| hgdp | rs780936696 |
| ensembl | rs780936696 |
| geneview | rs780936696 |
| scholar | rs780936696 |
| rs780936696 | |
| pharmgkb | rs780936696 |
| gwascentral | rs780936696 |
| openSNP | rs780936696 |
| 23andMe | rs780936696 |
| SNPshot | rs780936696 |
| SNPdbe | rs780936696 |
| MSV3d | rs780936696 |
| GWAS Ctlg | rs780936696 |
| Max Magnitude | 8 |
ASPA gene variant, known as c.237-2A>T
Note that one source in ClinVar indicates that the minor allele is a pathogenic mutation (for Canavan disease), while another source indicates the minor allele is of uncertain significance.
| ClinVar | |
|---|---|
| Risk | Rs780936696(T;T) |
| Alt | Rs780936696(T;T) |
| Reference | Rs780936696(A;A) |
| Significance | Other |
| Disease | Spongy degeneration of central nervous system |
| Variation | info |
| Gene | SPATA22 ASPA |
| CLNDBN | Spongy degeneration of central nervous system |
| Reversed | 0 |
| HGVS | NC_000017.10:g.3384895A>T |
| CLNSRC | |
| CLNACC | RCV000169526.2, |
