rs7842601
From SNPedia
| Orientation | plus |
| Stabilized | plus |
| Make rs7842601(C;C) |
| Make rs7842601(C;T) |
| Make rs7842601(T;T) |
| Reference | GRCh38 38.1/141 |
| Chromosome | 8 |
| Position | 42681912 |
| is a | snp |
| is | mentioned by |
| dbSNP | rs7842601 |
| dbSNP (classic) | rs7842601 |
| ClinGen | rs7842601 |
| ebi | rs7842601 |
| HLI | rs7842601 |
| Exac | rs7842601 |
| Gnomad | rs7842601 |
| Varsome | rs7842601 |
| LitVar | rs7842601 |
| Map | rs7842601 |
| PheGenI | rs7842601 |
| Biobank | rs7842601 |
| 1000 genomes | rs7842601 |
| hgdp | rs7842601 |
| ensembl | rs7842601 |
| geneview | rs7842601 |
| scholar | rs7842601 |
| rs7842601 | |
| pharmgkb | rs7842601 |
| gwascentral | rs7842601 |
| openSNP | rs7842601 |
| 23andMe | rs7842601 |
| SNPshot | rs7842601 |
| SNPdbe | rs7842601 |
| MSV3d | rs7842601 |
| GWAS Ctlg | rs7842601 |
| GMAF | 0.3191 |
| Max Magnitude | 0 |
| ? | (C;C) (C;T) (T;T) | 28 |
|---|---|---|
|
| ||
| Rs7842601 | |
|---|---|
| PubMed | [PMID 17135278 ]
|
| Affy Probeset | SNP_A-8559219 |
| Affy Orientation | same |
| On GW 5.0 | |
| Alleles A/B | C/T |
| Ancestral | T |
| Population | Caucasian (USA, Australia) |
| Allele | T |
| Case Freq. | |
| Control Freq. | |
| Odds Ratio Het | |
| Odds Ratio Hom | |
| Odds Ratio All | 1.35 |
| Disease | Substance dependence, Nicotine (SD-N) |
rs7842601 is in linkage disequilibrium with a polymorphism that increases susceptibility to Substance dependence, Nicotine 1.35 times for carriers of the T allele [PMID 17135278]
