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rs79023478

From SNPedia

Orientationplus
Stabilizedplus
Geno Mag Summary
(A;A) 1 Possibly benign, but possibly some connection to cardiovascular issues
(A;G) 1 Possibly benign, but possibly connected to some cardiovascular issues
(G;G) 0 common/normal
ReferenceGRCh38.p7 38.3/150
Chromosome1
Position228315865
GeneOBSCN
is asnp
is mentioned by
dbSNPrs79023478
dbSNP (classic)rs79023478
ClinGenrs79023478
ebirs79023478
HLIrs79023478
Exacrs79023478
Gnomadrs79023478
Varsomers79023478
LitVarrs79023478
Maprs79023478
PheGenIrs79023478
Biobankrs79023478
1000 genomesrs79023478
hgdprs79023478
ensemblrs79023478
geneviewrs79023478
scholarrs79023478
googlers79023478
pharmgkbrs79023478
gwascentralrs79023478
openSNPrs79023478
23andMers79023478
SNPshotrs79023478
SNPdbers79023478
MSV3drs79023478
GWAS Ctlgrs79023478
Max Magnitude1

rs79023478, also known as c.13031G>A, p.Arg4344Gln and R4344Q, represents a variant in the obscurin OBSCN gene on chromosome 1.

A 2007 report of a 19-year old Japanese hypertrophic cardiomyopathy patient carrying one rs79023478(A) allele concluded, following in vitro functional studies, that this allele was likely to be causative for the condition.[PMID 17716621]

A 2017 report based on studying mice genetically engineered to be homozygous for the rs79023478(A) variant concluded that under sedentary conditions, the R4344Q mutation results in Ca2+ deregulation and spontaneous arrhythmia, whereas in the presence of chronic, pathological stress, it leads to cardiac remodeling and dilation. Note however that this study did not study mice heterozygous for the rs79023478(A) variant.10.1126/sciadv.1603081

Furthermore, a 2016 publication studying hypertrophic cardiomyopathy diagnoses across diverse populations observed that there is a very large difference in the frequency of the R4344Q variant between Caucasians and African-Americans: around 0% vs 10%, respectively. Given a hypertrophic cardiomyopathy frequency of about 1 in 500 people in general across most populations (including African-Americans), this argues that either the penetrance of the R4344Q variant is very low or even that it is benign, although perhaps it might play a (minor?) role in the development of cardiovascular disease in a more general way and/or in the presence of certain environmental or biological stressors.[PMID 27532831OA-icon.png]