rs80357540
From SNPedia
| Orientation | minus |
| Stabilized | minus |
| Geno | Mag | Summary |
|---|---|---|
| (-;CT) | 6 | BRCA1 variant considered pathogenic for breast cancer |
| (-;TC) | 6 | BRCA1 variant considered pathogenic for breast cancer |
| (CT;CT) | 0 | common in clinvar |
| (TC;TC) | 0 | common in complete genomics |
| Make rs80357540(-;-) |
| Reference | GRCh38 38.1/141 |
| Chromosome | 17 |
| Position | 43092787 |
| Gene | BRCA1 |
| is a | snp |
| is | mentioned by |
| dbSNP | rs80357540 |
| dbSNP (classic) | rs80357540 |
| ClinGen | rs80357540 |
| ebi | rs80357540 |
| HLI | rs80357540 |
| Exac | rs80357540 |
| Gnomad | rs80357540 |
| Varsome | rs80357540 |
| LitVar | rs80357540 |
| Map | rs80357540 |
| PheGenI | rs80357540 |
| Biobank | rs80357540 |
| 1000 genomes | rs80357540 |
| hgdp | rs80357540 |
| ensembl | rs80357540 |
| geneview | rs80357540 |
| scholar | rs80357540 |
| rs80357540 | |
| pharmgkb | rs80357540 |
| gwascentral | rs80357540 |
| openSNP | rs80357540 |
| 23andMe | rs80357540 |
| SNPshot | rs80357540 |
| SNPdbe | rs80357540 |
| MSV3d | rs80357540 |
| GWAS Ctlg | rs80357540 |
| Merged from | Rs397509007 |
| Max Magnitude | 6 |
rs80357540, also known as 2862delTC, c.2743_2744delTC and p.Ser915Terfs, is a variant in the BRCA1 gene considered pathogenic for breast cancer in ClinVar.
| ClinVar | |
|---|---|
| Risk | Rs80357540(CT;CT) rs80357540(-;-) |
| Alt | Rs80357540(CT;CT) rs80357540(-;-) |
| Reference | Rs80357540(TC;TC) |
| Significance | Pathogenic |
| Disease | Hereditary breast and ovarian cancer syndrome Hereditary cancer-predisposing syndrome Breast-ovarian cancer |
| Variation | info |
| Gene | BRCA1 |
| CLNDBN | Hereditary breast and ovarian cancer syndrome Hereditary cancer-predisposing syndrome Breast-ovarian cancer, familial 1 |
| Reversed | 1 |
| HGVS | NC_000017.10:g.41244803_41244804delAG |
| CLNSRC | Breast Cancer Information Core (BRCA1) OMIM Allelic Variant |
| CLNACC | RCV000047955.3, RCV000132272.2, RCV000167766.5, |
