rs80357696
From SNPedia
Orientation | minus |
Stabilized | minus |
Geno | Mag | Summary |
---|---|---|
(-;GTGTCCCATCT) | 6 | BRCA1 variant considered pathogenic for breast cancer |
(-;TGTCCCATCTG) | 6 | BRCA1 variant considered pathogenic for breast cancer |
(GTGTCCCATCT;GTGTCCCATCT) | 0 | common/normal |
(TGTCCCATCTG;TGTCCCATCTG) | 0 | common in clinvar |
Make rs80357696(-;-) |
Reference | GRCh38 38.1/142 |
Chromosome | 17 |
Position | 43124018 |
Gene | BRCA1, NBR2 |
is a | snp |
is | mentioned by |
dbSNP | rs80357696 |
dbSNP (classic) | rs80357696 |
ClinGen | rs80357696 |
ebi | rs80357696 |
HLI | rs80357696 |
Exac | rs80357696 |
Gnomad | rs80357696 |
Varsome | rs80357696 |
LitVar | rs80357696 |
Map | rs80357696 |
PheGenI | rs80357696 |
Biobank | rs80357696 |
1000 genomes | rs80357696 |
hgdp | rs80357696 |
ensembl | rs80357696 |
geneview | rs80357696 |
scholar | rs80357696 |
rs80357696 | |
pharmgkb | rs80357696 |
gwascentral | rs80357696 |
openSNP | rs80357696 |
23andMe | rs80357696 |
SNPshot | rs80357696 |
SNPdbe | rs80357696 |
MSV3d | rs80357696 |
GWAS Ctlg | rs80357696 |
Merged from | Rs80359877 |
Max Magnitude | 6 |
rs80357696, also known as 188del11, c.69_79delGTGTCCCATCT and p.Glu23_Cys27?fs, is a variant in the BRCA1 gene considered pathogenic for breast cancer in ClinVar.
ClinVar | |
---|---|
Risk | Rs80357696(TGTCCCATCTG;TGTCCCATCTG) rs80357696(-;-) |
Alt | Rs80357696(TGTCCCATCTG;TGTCCCATCTG) rs80357696(-;-) |
Reference | Rs80357696(GTGTCCCATCT;GTGTCCCATCT) |
Significance | Pathogenic |
Disease | Hereditary breast and ovarian cancer syndrome Breast-ovarian cancer Hereditary cancer-predisposing syndrome not provided |
Variation | info |
Gene | NBR2 BRCA1 |
CLNDBN | Hereditary breast and ovarian cancer syndrome Breast-ovarian cancer, familial 1 Hereditary cancer-predisposing syndrome not provided |
Reversed | 1 |
HGVS | NC_000017.10:g.41276034_41276044delCAGATGGGACA |
CLNSRC | Breast Cancer Information Core (BRCA1) |
CLNACC | RCV000049106.3, RCV000111682.4, RCV000131391.3, RCV000486060.1, |