Template:Hgsnp
From SNPedia
template:hgsnp
generates an infobox and adds relevant semantic data for haplogroup defining SNPs
notes:
it's obviously not going to work properly for SNPs defining /multiple/ haplogroups but appending additional
information to the semantic properties is somewhat kludgy
the 'tree' and 'tree_build' is included as a property, but harmonizing all the SNPs to use a common tree
and build is basically required (probably ISOGG [y] and PhyloTree.org [mt] at this point)
formatting could be better
property naming could probably be better
usage:
{{hgsnp
|alternate_names= [comma separated list of alternate name of the SNP - such as M86,M87]
|source= [comma separated list of relevant sources, generally PMIDs using the PMID template]
|tree= [what common tree is the information derived from]
|tree_build= [what tree build is the information derived from]
|clade_haplogroup= [The top level clade for this haplogroup, such as R, linking format is Haplogroup X ([mt]/[Y-]DNA)]
|ancestral_haplogroup= [ancestral haplogroup, such as R1b1b2a1a2, linking format is Haplogroup X ([mt]/[Y-]DNA)]
|derived_haplogroup= [derived haplogroup, such as R1b1b2a1a2f, linking format is Haplogroup X ([mt]/[Y-]DNA)]
|ancestral_allele= [allele shared by the ancestral haplogroup]
|derived_allele= [allele shared by the derived haplogroup]
}}
semantic properties defined are currently structured as follows:
[[Hgsnp alternate name::{{{alternate_name}}}]] for all alternate names
[[Clade [Y/MT] haplogroup::{{{clade_haplogroup}}}]]
[[Ancestral [Y/MT] haplogroup::{{{ancestral_haplogroup}}}]]
[[Derived [Y/MT] haplogroup::{{{derived_haplogroup}}}]]
[[Ancestral allele::{{{ancestral_haplogroup}}}]]
[[Derived allele::{{{derived_haplogroup}}}]]
[[Flag::Haplogroup]]
| Haplogroup SNP | |
|---|---|
| Alt. Name(s) | None specified |
| Source(s) | None specified |
| Tree | None specified |
| Clade Haplogroup |
No Clade Haplogroup |
| Ancestral Haplogroup |
No Ancestral Haplogroup |
| Derived Haplogroup |
No Derived Haplogroup |
| Ancestral Allele | |
| Derived Allele | |
| Haplogroup SNP | |
|---|---|
| Alt. Name(s) | M86, M87 |
| Source(s) | [PMID 1234567] [PMID 9876543] |
| Tree | None specified |
| Clade Haplogroup |
No Clade Haplogroup |
| Ancestral Haplogroup |
No chromosome |
| Derived Haplogroup |
No chromosome |
| Ancestral Allele | |
| Derived Allele | |
