rs10825269

Orientation

plus

Stabilized

plus

Geno	Mag	Summary
(C;C)	0	common in clinvar

Make rs10825269(C;T)

Make rs10825269(T;T)

Reference

GRCh38 38.1/141

Chromosome

10

Position

54195850

Gene

PCDH15

is a	snp
is	mentioned by
dbSNP	rs10825269
dbSNP (classic)	rs10825269
ClinGen	rs10825269
ebi	rs10825269
HLI	rs10825269
Exac	rs10825269
Gnomad	rs10825269
Varsome	rs10825269
LitVar	rs10825269
Map	rs10825269
PheGenI	rs10825269
Biobank	rs10825269
1000 genomes	rs10825269
hgdp	rs10825269
ensembl	rs10825269
geneview	rs10825269
scholar	rs10825269
google	rs10825269
pharmgkb	rs10825269
gwascentral	rs10825269
openSNP	rs10825269
23andMe	rs10825269
SNPshot	rs10825269
SNPdbe	rs10825269
MSV3d	rs10825269
GWAS Ctlg	rs10825269

GMAF

0.208

Max Magnitude

0

?	(C;C) (C;T) (T;T)	28

[PMID 19816713] A nonsynonymous SNP within PCDH15 is associated with lipid traits in familial combined hyperlipidemia

ClinVar
Risk	rs10825269(T;T)
Alt	rs10825269(T;T)
Reference	Rs10825269(C;C)
Significance	Probable-non-pathogenic
Disease	not specified not provided Nonsyndromic Hearing Loss Retinitis pigmentosa-deafness syndrome
Variation	info
Gene	PCDH15
CLNDBN	not specified not provided Nonsyndromic Hearing Loss, Recessive Retinitis pigmentosa-deafness syndrome
Reversed	0
HGVS	NC_000010.10:g.55955610C>T
CLNSRC	ClinVar
CLNACC	RCV000039695.4, RCV000086940.1, RCV000304575.1, RCV000407693.1,

GWAS snp
PMID	[PMID 24797007]
Trait	Irritable bowel syndrome
Title	Genome-wide association study identifies two novel genomic regions in irritable bowel syndrome.
Risk Allele	T
P-val	5E-6
Odds Ratio	1.55 [1.28-1.87]