rs10985112
From SNPedia
| Orientation | plus |
| Stabilized | plus |
| Geno | Mag | Summary |
|---|---|---|
| (G;G) | 0 | common in complete genomics |
| Make rs10985112(A;A) |
| Make rs10985112(A;G) |
| Reference | GRCh38 38.1/141 |
| Chromosome | 9 |
| Position | 120969130 |
| Gene | C5 |
| is a | snp |
| is | mentioned by |
| dbSNP | rs10985112 |
| dbSNP (classic) | rs10985112 |
| ClinGen | rs10985112 |
| ebi | rs10985112 |
| HLI | rs10985112 |
| Exac | rs10985112 |
| Gnomad | rs10985112 |
| Varsome | rs10985112 |
| LitVar | rs10985112 |
| Map | rs10985112 |
| PheGenI | rs10985112 |
| Biobank | rs10985112 |
| 1000 genomes | rs10985112 |
| hgdp | rs10985112 |
| ensembl | rs10985112 |
| geneview | rs10985112 |
| scholar | rs10985112 |
| rs10985112 | |
| pharmgkb | rs10985112 |
| gwascentral | rs10985112 |
| openSNP | rs10985112 |
| 23andMe | rs10985112 |
| SNPshot | rs10985112 |
| SNPdbe | rs10985112 |
| MSV3d | rs10985112 |
| GWAS Ctlg | rs10985112 |
| GMAF | 0.1552 |
| Max Magnitude | 0 |
| ? | (A;A) (A;G) (G;G) | 28 |
|---|---|---|
|
| ||
| Rs10985112 | |
|---|---|
| PubMed | [PMID 17880261 |
| Affy Probeset | SNP_A-4241423 |
| Affy Orientation | same |
| On GW 5.0 | 1 |
| Alleles A/B | A/G |
| Ancestral | A |
| Population | Caucasian |
| Allele | A |
| Case Freq. | 0.1 |
| Control Freq. | 0.07 |
| Odds Ratio Het | |
| Odds Ratio Hom | |
| Odds Ratio All | 1.57 |
| Disease | Rheumatoid Arthritis (RA) |
rs10985112 increases susceptibility to Rheumatoid Arthritis 1.57 times for carriers of the A allele [PMID 17880261
]
[PMID 20018075
] Genome-wide association study of rheumatoid arthritis by a score test based on wavelet transformation.
| ClinVar | |
|---|---|
| Risk | rs10985112(A;A) |
| Alt | rs10985112(A;A) |
| Reference | Rs10985112(G;G) |
| Significance | Non-pathogenic |
| Disease | not specified |
| Variation | info |
| Gene | C5 |
| CLNDBN | not specified |
| Reversed | 0 |
| HGVS | NC_000009.11:g.123731408G>A |
| CLNSRC | |
| CLNACC | RCV000456091.1, |
Categories:
- Is a snp
- In dbSNP
- SNPs on chromosome 9
- Has genotype
- Has population
- Has Report GE
- On chip 23andMe v1
- On chip 23andMe v2
- On chip 23andMe v3
- On chip 23andMe v4
- On chip Affy GenomeWide 6
- On chip Affy500k
- On chip Ancestry v2
- On chip FTDNA2
- On chip HumanOmni1Quad
- On chip Illumina Human 1M
- On chip 23andMe v5
- On chip Ancestry v2c
- On chip Ancestry v2d
