rs12483377
From SNPedia
Orientation | plus |
Stabilized | plus |
Geno | Mag | Summary |
---|---|---|
(A;A) | 1 | benign polymorphism; no significant effect |
(A;G) | 1 | benign polymorphism |
(G;G) | 0 | common in clinvar |
Reference | GRCh38 38.1/141 |
Chromosome | 21 |
Position | 45511195 |
Gene | COL18A1, SLC19A1 |
is a | snp |
is | mentioned by |
dbSNP | rs12483377 |
dbSNP (classic) | rs12483377 |
ClinGen | rs12483377 |
ebi | rs12483377 |
HLI | rs12483377 |
Exac | rs12483377 |
Gnomad | rs12483377 |
Varsome | rs12483377 |
LitVar | rs12483377 |
Map | rs12483377 |
PheGenI | rs12483377 |
Biobank | rs12483377 |
1000 genomes | rs12483377 |
hgdp | rs12483377 |
ensembl | rs12483377 |
geneview | rs12483377 |
scholar | rs12483377 |
rs12483377 | |
pharmgkb | rs12483377 |
gwascentral | rs12483377 |
openSNP | rs12483377 |
23andMe | rs12483377 |
SNPshot | rs12483377 |
SNPdbe | rs12483377 |
MSV3d | rs12483377 |
GWAS Ctlg | rs12483377 |
GMAF | 0.0551 |
Max Magnitude | 1 |
aka c.4309G>A (p.Asp1437Asn)
formerly considered a mutation; now considered benign
? | (A;A) (A;G) (G;G) | 28 |
---|---|---|
|
ClinVar | |
---|---|
Risk | Rs12483377(A;A) |
Alt | Rs12483377(A;A) |
Reference | Rs12483377(G;G) |
Significance | Pathogenic |
Disease | Knobloch syndrome 1 not specified |
Variation | info |
Gene | COL18A1 |
CLNDBN | Knobloch syndrome 1 not specified |
Reversed | 0 |
HGVS | NC_000021.8:g.46931109G>A |
CLNSRC | OMIM Allelic Variant |
CLNACC | RCV000018655.28, RCV000248578.1, |
[PMID 18805939] Functional genetic polymorphisms and female reproductive disorders: part II--endometriosis.
[PMID 19493349] 118 SNPs of folate-related genes and risks of spina bifida and conotruncal heart defects.
[PMID 19961619] A pooling-based genome-wide analysis identifies new potential candidate genes for atopy in the European Community Respiratory Health Survey (ECRHS).
Categories:
- Is a snp
- In dbSNP
- SNPs on chromosome 21
- Has genotype
- Has population
- Uses omim
- On chip 23andMe v1
- On chip 23andMe v2
- On chip 23andMe v3
- On chip 23andMe v4
- On chip Affy GenomeWide 6
- On chip Ancestry v2
- On chip FTDNA2
- On chip HumanOmni1Quad
- On chip Illumina Human 1M
- On chip 23andMe v5
- On chip Ancestry v2c
- On chip Ancestry v2d