rs12483377
From SNPedia
| Orientation | plus |
| Stabilized | plus |
| Geno | Mag | Summary |
|---|---|---|
| (A;A) | 1 | benign polymorphism; no significant effect |
| (A;G) | 1 | benign polymorphism |
| (G;G) | 0 | common in clinvar |
| Reference | GRCh38 38.1/141 |
| Chromosome | 21 |
| Position | 45511195 |
| Gene | COL18A1, SLC19A1 |
| is a | snp |
| is | mentioned by |
| dbSNP | rs12483377 |
| dbSNP (classic) | rs12483377 |
| ClinGen | rs12483377 |
| ebi | rs12483377 |
| HLI | rs12483377 |
| Exac | rs12483377 |
| Gnomad | rs12483377 |
| Varsome | rs12483377 |
| LitVar | rs12483377 |
| Map | rs12483377 |
| PheGenI | rs12483377 |
| Biobank | rs12483377 |
| 1000 genomes | rs12483377 |
| hgdp | rs12483377 |
| ensembl | rs12483377 |
| geneview | rs12483377 |
| scholar | rs12483377 |
| rs12483377 | |
| pharmgkb | rs12483377 |
| gwascentral | rs12483377 |
| openSNP | rs12483377 |
| 23andMe | rs12483377 |
| SNPshot | rs12483377 |
| SNPdbe | rs12483377 |
| MSV3d | rs12483377 |
| GWAS Ctlg | rs12483377 |
| GMAF | 0.0551 |
| Max Magnitude | 1 |
aka c.4309G>A (p.Asp1437Asn)
formerly considered a mutation; now considered benign
| ? | (A;A) (A;G) (G;G) | 28 |
|---|---|---|
|
| ||
| ClinVar | |
|---|---|
| Risk | Rs12483377(A;A) |
| Alt | Rs12483377(A;A) |
| Reference | Rs12483377(G;G) |
| Significance | Pathogenic |
| Disease | Knobloch syndrome 1 not specified |
| Variation | info |
| Gene | COL18A1 |
| CLNDBN | Knobloch syndrome 1 not specified |
| Reversed | 0 |
| HGVS | NC_000021.8:g.46931109G>A |
| CLNSRC | OMIM Allelic Variant |
| CLNACC | RCV000018655.28, RCV000248578.1, |
[PMID 18805939
] Functional genetic polymorphisms and female reproductive disorders: part II--endometriosis.
[PMID 19493349
] 118 SNPs of folate-related genes and risks of spina bifida and conotruncal heart defects.
[PMID 19961619
] A pooling-based genome-wide analysis identifies new potential candidate genes for atopy in the European Community Respiratory Health Survey (ECRHS).
Categories:
- Is a snp
- In dbSNP
- SNPs on chromosome 21
- Has genotype
- Has population
- Uses omim
- On chip 23andMe v1
- On chip 23andMe v2
- On chip 23andMe v3
- On chip 23andMe v4
- On chip Affy GenomeWide 6
- On chip Ancestry v2
- On chip FTDNA2
- On chip HumanOmni1Quad
- On chip Illumina Human 1M
- On chip 23andMe v5
- On chip Ancestry v2c
- On chip Ancestry v2d
