rs12599402
From SNPedia
| Orientation | plus |
| Stabilized | plus |
| Make rs12599402(C;C) |
| Make rs12599402(C;T) |
| Make rs12599402(T;T) |
| Reference | GRCh38 38.1/141 |
| Chromosome | 16 |
| Position | 11096031 |
| Gene | CLEC16A |
| is a | snp |
| is | mentioned by |
| dbSNP | rs12599402 |
| dbSNP (classic) | rs12599402 |
| ClinGen | rs12599402 |
| ebi | rs12599402 |
| HLI | rs12599402 |
| Exac | rs12599402 |
| Gnomad | rs12599402 |
| Varsome | rs12599402 |
| LitVar | rs12599402 |
| Map | rs12599402 |
| PheGenI | rs12599402 |
| Biobank | rs12599402 |
| 1000 genomes | rs12599402 |
| hgdp | rs12599402 |
| ensembl | rs12599402 |
| geneview | rs12599402 |
| scholar | rs12599402 |
| rs12599402 | |
| pharmgkb | rs12599402 |
| gwascentral | rs12599402 |
| openSNP | rs12599402 |
| 23andMe | rs12599402 |
| SNPshot | rs12599402 |
| SNPdbe | rs12599402 |
| MSV3d | rs12599402 |
| GWAS Ctlg | rs12599402 |
| GMAF | 0.477 |
| Max Magnitude | 0 |
| ? | (C;C) (C;T) (T;T) | 28 |
|---|---|---|
|
| ||
rs12599402 is a SNP in the ch 16p13 region.
A study totaling over 2,500 Han Chinese patients with systemic lupus erythematosus (SLE) concluded that rs12599402 was significantly associated with risk (p < 5 x 10e-8). The authors suspect that this SNP is tagging the same functional variant as previously reported in European populations.[PMID 20805369]
| GWAS snp | |
|---|---|
| PMID | [PMID 23273568 ]
|
| Trait | Systemic lupus erythematosus |
| Title | Meta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians. |
| Risk Allele | A |
| P-val | 5E-7 |
| Odds Ratio | 1.28 |
