rs13149290
From SNPedia
| Orientation | plus |
| Stabilized | plus |
| Geno | Mag | Summary |
|---|---|---|
| (C;C) | 1.5 | Slightly increased risk of developing prostate cancer |
| (C;T) | 1.5 | Slightly increased risk of developing prostate cancer |
| (T;T) | 1 | Normal risk of developing prostate cancer |
| Reference | GRCh38 38.1/141 |
| Chromosome | 4 |
| Position | 145829814 |
| Gene | ZNF827 |
| is a | snp |
| is | mentioned by |
| dbSNP | rs13149290 |
| dbSNP (classic) | rs13149290 |
| ClinGen | rs13149290 |
| ebi | rs13149290 |
| HLI | rs13149290 |
| Exac | rs13149290 |
| Gnomad | rs13149290 |
| Varsome | rs13149290 |
| LitVar | rs13149290 |
| Map | rs13149290 |
| PheGenI | rs13149290 |
| Biobank | rs13149290 |
| 1000 genomes | rs13149290 |
| hgdp | rs13149290 |
| ensembl | rs13149290 |
| geneview | rs13149290 |
| scholar | rs13149290 |
| rs13149290 | |
| pharmgkb | rs13149290 |
| gwascentral | rs13149290 |
| openSNP | rs13149290 |
| 23andMe | rs13149290 |
| SNPshot | rs13149290 |
| SNPdbe | rs13149290 |
| MSV3d | rs13149290 |
| GWAS Ctlg | rs13149290 |
| GMAF | 0.416 |
| Max Magnitude | 1.5 |
| ? | (C;C) (C;T) (T;T) | 28 |
|---|---|---|
|
| ||
rs13149290 is one of seven SNPs found in a combined study of over 1,000 patients to be associated with increased risk for prostate cancer. The risk allele for this SNP is (C); and while the odds ratio was not specifically reported, the probability of false significance (not permuted though) was given as p=2.5 x 10e-5, using a dominant model of risk.[PMID 18073375]
Categories:
- Is a snp
- In dbSNP
- SNPs on chromosome 4
- Has genotype
- Has population
- On chip 23andMe v1
- On chip 23andMe v2
- On chip 23andMe v3
- On chip 23andMe v4
- On chip Affy GenomeWide 6
- On chip Ancestry v2
- On chip FTDNA2
- On chip FTDNA
- On chip HumanOmni1Quad
- On chip Illumina Human 1M
- On chip NatGeo2
- On chip 23andMe v5
- On chip Ancestry v2c
- On chip Ancestry v2d
