rs17235409
| Orientation | plus |
| Stabilized | plus |
| Geno | Mag | Summary |
|---|---|---|
| (G;G) | 0 | common in complete genomics |
| Make rs17235409(A;A) |
| Make rs17235409(A;G) |
| Reference | GRCh38 38.1/141 |
| Chromosome | 2 |
| Position | 218395009 |
| Gene | SLC11A1 |
| is a | snp |
| is | mentioned by |
| dbSNP | rs17235409 |
| dbSNP (classic) | rs17235409 |
| ClinGen | rs17235409 |
| ebi | rs17235409 |
| HLI | rs17235409 |
| Exac | rs17235409 |
| Gnomad | rs17235409 |
| Varsome | rs17235409 |
| LitVar | rs17235409 |
| Map | rs17235409 |
| PheGenI | rs17235409 |
| Biobank | rs17235409 |
| 1000 genomes | rs17235409 |
| hgdp | rs17235409 |
| ensembl | rs17235409 |
| geneview | rs17235409 |
| scholar | rs17235409 |
| rs17235409 | |
| pharmgkb | rs17235409 |
| gwascentral | rs17235409 |
| openSNP | rs17235409 |
| 23andMe | rs17235409 |
| SNPshot | rs17235409 |
| SNPdbe | rs17235409 |
| MSV3d | rs17235409 |
| GWAS Ctlg | rs17235409 |
| GMAF | 0.07025 |
| Max Magnitude | 0 |
| ? | (A;A) (A;G) (G;G) | 28 |
|---|---|---|
|
| ||
[PMID 19723394
] No association with tuberculosis
[PMID 21524304] Evidence of association with type 1 diabetes in the SLC11A1 gene region
| ClinVar | |
|---|---|
| Risk | rs17235409(A;A) rs17235409(C;C) |
| Alt | rs17235409(A;A) rs17235409(C;C) |
| Reference | Rs17235409(G;G) |
| Significance | Other |
| Disease | Buruli ulcer |
| Variation | info |
| Gene | SLC11A1 |
| CLNDBN | Buruli ulcer, susceptibility to |
| Reversed | 0 |
| HGVS | NC_000002.11:g.219259732G>A |
| CLNSRC | OMIM Allelic Variant UniProtKB (protein) |
| CLNACC | RCV000009814.3, |
[PMID 15720714] Construction and analysis of tag single nucleotide polymorphism maps for six human-mouse orthologous candidate genes in type 1 diabetes.
[PMID 17371589] Sex- and age-dependent association of SLC11A1 polymorphisms with tuberculosis in Chinese: a case control study.
[PMID 18504650] SLC11A1 polymorphisms are associated with the risk of chronic obstructive pulmonary disease in a Korean population.
[PMID 19055603] NRAMP1 (SLC11A1) gene polymorphisms that correlate with autoimmune versus infectious disease susceptibility in tuberculosis and rheumatoid arthritis.
[PMID 20196868] Polymorphisms in IL-1beta, vitamin D receptor Fok1, and Toll-like receptor 2 are associated with extrapulmonary tuberculosis.
[PMID 21283567] SLC11A1 (NRAMP1) polymorphisms and tuberculosis susceptibility: updated systematic review and meta-analysis.
[PMID 22008758] SLC11A1 and VDR gene variants and susceptibility to tuberculosis and disease progression in East India.
[PMID 25856512] Genetic variants of SLC11A1 are associated with both autoimmune and infectious diseases: systematic review and meta-analysis
[PMID 32352966] Interaction between host genes and Mycobacterium tuberculosis lineage can affect tuberculosis severity: evidence for coevolution?
