rs1800454

Orientation

minus

Stabilized

minus

Geno	Mag	Summary
(A;A)	1.5	affected
(A;G)	1.3	carrier
(G;G)	0	normal

Reference

GRCh38 38.1/141

Chromosome

6

Position

32832635

Gene

TAP2

is a	snp
is	mentioned by
dbSNP	rs1800454
dbSNP (classic)	rs1800454
ClinGen	rs1800454
ebi	rs1800454
HLI	rs1800454
Exac	rs1800454
Gnomad	rs1800454
Varsome	rs1800454
LitVar	rs1800454
Map	rs1800454
PheGenI	rs1800454
Biobank	rs1800454
1000 genomes	rs1800454
hgdp	rs1800454
ensembl	rs1800454
geneview	rs1800454
scholar	rs1800454
google	rs1800454
pharmgkb	rs1800454
gwascentral	rs1800454
openSNP	rs1800454
23andMe	rs1800454
SNPshot	rs1800454
SNPdbe	rs1800454
MSV3d	rs1800454
GWAS Ctlg	rs1800454

Merged from

Rs104893997

GMAF

0.1538

Max Magnitude

1.5

?	(A;A) (A;G) (G;G)	28

OMIM	170261
Desc	PEPTIDE TRANSPORTER PSF2 POLYMORPHISM
Variant	0001
Related	also

ClinVar
Risk	Rs1800454(A;A)
Alt	Rs1800454(A;A)
Reference	Rs1800454(G;G)
Significance	Non-pathogenic
Disease	PEPTIDE TRANSPORTER PSF2 POLYMORPHISM not specified
Variation	info
Gene	TAP2
CLNDBN	PEPTIDE TRANSPORTER PSF2 POLYMORPHISM not specified
Reversed	1
HGVS	NC_000006.11:g.32800412C>T
CLNSRC	OMIM Allelic Variant UniProtKB (protein)
CLNACC	RCV000014727.2, RCV000455533.1,

[PMID 19387463] Variation in the ATP-binding cassette transporter 2 gene is a separate risk factor for systemic lupus erythematosus within the MHC.