rs1800559
Orientation | minus |
Stabilized | minus |
Geno | Mag | Summary |
---|---|---|
(A;A) | 4 | susceptibility to malignant hyperthermia |
(A;G) | 4 | susceptibility to malignant hyperthermia |
(G;G) | 0 | common in complete genomics |
Reference | GRCh38 38.1/141 |
Chromosome | 1 |
Position | 201060815 |
Gene | CACNA1S |
is a | snp |
is | mentioned by |
dbSNP | rs1800559 |
dbSNP (classic) | rs1800559 |
ClinGen | rs1800559 |
ebi | rs1800559 |
HLI | rs1800559 |
Exac | rs1800559 |
Gnomad | rs1800559 |
Varsome | rs1800559 |
LitVar | rs1800559 |
Map | rs1800559 |
PheGenI | rs1800559 |
Biobank | rs1800559 |
1000 genomes | rs1800559 |
hgdp | rs1800559 |
ensembl | rs1800559 |
geneview | rs1800559 |
scholar | rs1800559 |
rs1800559 | |
pharmgkb | rs1800559 |
gwascentral | rs1800559 |
openSNP | rs1800559 |
23andMe | rs1800559 |
SNPshot | rs1800559 |
SNPdbe | rs1800559 |
MSV3d | rs1800559 |
GWAS Ctlg | rs1800559 |
Merged from | Rs28931587 |
Max Magnitude | 4 |
rs1800559, also known as Arg1086His or R1086H, is a SNP in the CACNA1S gene on chromosome 1.
The rs1800559(A) allele is reported to be associated with malignant hyperthermia, type 5.[PMID 9199552]
This variant meets the criteria published in 2013 by the ACMG regarding incidental findings in exome or genome sequencing, as a variant that they do recommend informing a patient about.[PMID 23788249]
ClinVar | |
---|---|
Risk | Rs1800559(A;A) rs1800559(T;T) |
Alt | Rs1800559(A;A) rs1800559(T;T) |
Reference | Rs1800559(G;G) |
Significance | Other |
Disease | Malignant hyperthermia susceptibility type 5 |
Variation | info |
Gene | CACNA1S |
CLNDBN | Malignant hyperthermia susceptibility type 5 |
Reversed | 1 |
HGVS | NC_000001.10:g.201029943C>T |
CLNSRC | OMIM Allelic Variant UniProtKB (protein) |
CLNACC | RCV000019193.2, |
[PMID 9199552] Malignant-hyperthermia susceptibility is associated with a mutation of the alpha 1-subunit of the human dihydropyridine-sensitive L-type voltage-dependent calcium-channel receptor in skeletal muscle.
[PMID 10590402] Genetics and pathogenesis of malignant hyperthermia.
[PMID 11260227] Identification of the Arg1086His mutation in the alpha subunit of the voltage-dependent calcium channel (CACNA1S) in a North American family with malignant hyperthermia.