rs1953126
| Orientation | plus |
| Stabilized | plus |
| Geno | Mag | Summary |
|---|---|---|
| (C;C) | 0 | normal |
| (C;T) | 1.3x increased risk for rheumatoid arthritis | |
| (T;T) | 1.3x increased risk for rheumatoid arthritis |
| Reference | GRCh38 38.1/141 |
| Chromosome | 9 |
| Position | 120878222 |
| Gene | PHF19 |
| is a | snp |
| is | mentioned by |
| dbSNP | rs1953126 |
| dbSNP (classic) | rs1953126 |
| ClinGen | rs1953126 |
| ebi | rs1953126 |
| HLI | rs1953126 |
| Exac | rs1953126 |
| Gnomad | rs1953126 |
| Varsome | rs1953126 |
| LitVar | rs1953126 |
| Map | rs1953126 |
| PheGenI | rs1953126 |
| Biobank | rs1953126 |
| 1000 genomes | rs1953126 |
| hgdp | rs1953126 |
| ensembl | rs1953126 |
| geneview | rs1953126 |
| scholar | rs1953126 |
| rs1953126 | |
| pharmgkb | rs1953126 |
| gwascentral | rs1953126 |
| openSNP | rs1953126 |
| 23andMe | rs1953126 |
| SNPshot | rs1953126 |
| SNPdbe | rs1953126 |
| MSV3d | rs1953126 |
| GWAS Ctlg | rs1953126 |
| GMAF | 0.3177 |
| Max Magnitude | 0 |
| ? | (C;C) (C;T) (T;T) | 28 |
|---|---|---|
|
| ||
A study of 475 Caucasian patients concluded that rs1953126, on chromosome 9q33.2, was significantly associated with rheumatoid arthritis (odds ratio 1.28, CI 1.16–1.40, trend p comb = 1.45e-06).[PMID 18648537
]
[PMID 19714643] TRAF1 polymorphisms associated with rheumatoid arthritis susceptibility in Asians and in Caucasians
| GWAS snp | |
|---|---|
| PMID | [PMID 21383967]
|
| Trait | |
| Title | Meta-Analysis of Genome-Wide Association Studies in Celiac Disease and Rheumatoid Arthritis Identifies Fourteen Non-HLA Shared Loci |
| Risk Allele | T |
| P-val | 4E-11 |
| Odds Ratio | None None |
[PMID 20017974] Simultaneous analysis of all single-nucleotide polymorphisms in genome-wide association study of rheumatoid arthritis.
[PMID 20017985] Adjusting for HLA-DRbeta1 in a genome-wide association analysis of rheumatoid arthritis and related biomarkers.
[PMID 20018005] Analysis of genome-wide association data by large-scale Bayesian logistic regression.
[PMID 20018022] Replication of recently identified associated single-nucleotide polymorphisms from six autoimmune diseases in Genetic Analysis Workshop 16 rheumatoid arthritis data.
[PMID 20018027] Conditional analysis of the major histocompatibility complex in rheumatoid arthritis.
[PMID 20018028] Armitage's trend test for genome-wide association analysis: one-sided or two-sided?
[PMID 20018053] A genome-wide association scan for rheumatoid arthritis data by Hotelling's T2 tests.
[PMID 20018075] Genome-wide association study of rheumatoid arthritis by a score test based on wavelet transformation.
[PMID 20018090] Comparative analysis of different approaches for dealing with candidate regions in the context of a genome-wide association study.
