rs2188962
| Orientation | plus |
| Stabilized | plus |
| Geno | Mag | Summary |
|---|---|---|
| (C;C) | 0 | common./normal |
| Make rs2188962(C;T) |
| Make rs2188962(T;T) |
| Reference | GRCh38 38.1/141 |
| Chromosome | 5 |
| Position | 132435113 |
| Gene | C5orf56 |
| is a | snp |
| is | mentioned by |
| dbSNP | rs2188962 |
| dbSNP (classic) | rs2188962 |
| ClinGen | rs2188962 |
| ebi | rs2188962 |
| HLI | rs2188962 |
| Exac | rs2188962 |
| Gnomad | rs2188962 |
| Varsome | rs2188962 |
| LitVar | rs2188962 |
| Map | rs2188962 |
| PheGenI | rs2188962 |
| Biobank | rs2188962 |
| 1000 genomes | rs2188962 |
| hgdp | rs2188962 |
| ensembl | rs2188962 |
| geneview | rs2188962 |
| scholar | rs2188962 |
| rs2188962 | |
| pharmgkb | rs2188962 |
| gwascentral | rs2188962 |
| openSNP | rs2188962 |
| 23andMe | rs2188962 |
| SNPshot | rs2188962 |
| SNPdbe | rs2188962 |
| MSV3d | rs2188962 |
| GWAS Ctlg | rs2188962 |
| GMAF | 0.1896 |
| Max Magnitude | 0 |
| ? | (C;C) (C;T) (T;T) | 28 |
|---|---|---|
|
| ||
| GWAS snp | |
|---|---|
| PMID | [PMID 18587394 ]
|
| Trait | Crohn's disease |
| Title | Genome-wide assocation defines more than 30 distinct susceptibility loci for Crohn's disease |
| Risk Allele | T |
| P-val | 2.0000000000000001E-18 |
| Odds Ratio | 1.25 [NR] |
| GWAS snp | |
|---|---|
| PMID | [PMID 20570966]
|
| Trait | Crohn's disease |
| Title | Fucosyltransferase 2(FUT2) Non-Secretor Status is associated with Crohn's Disease |
| Risk Allele | |
| P-val | 1E-7 |
| Odds Ratio | 1.36 [1.21-1.52] |
[PMID 21061378] Two independent genetic factors responsible for the associations of the IBD5 locus with Crohn's disease in the Czech population
[PMID 21674708] Two independent genetic factors responsible for the associations of the IBD5 locus with Crohn's disease in the Czech population
[PMID 19408013] Strategies and issues in the detection of pathway enrichment in genome-wide association studies.
[PMID 19557189] Identifying relationships among genomic disease regions: predicting genes at pathogenic SNP associations and rare deletions.
[PMID 20031576] Association of novel genetic Loci with circulating fibrinogen levels: a genome-wide association study in 6 population-based cohorts.
[PMID 20369022] Candidate causal regulatory effects by integration of expression QTLs with complex trait genetic associations.
[PMID 21304977] An investigation of genome-wide studies reported susceptibility loci for ulcerative colitis shows limited replication in north Indians.
| GWAS snp | |
|---|---|
| PMID | [PMID 23128233]
|
| Trait | Inflammatory bowel disease |
| Title | Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease. |
| Risk Allele | T |
| P-val | 1E-52 |
| Odds Ratio | 1.16 [1.125-1.191] |
